Allen Brain Atlas

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Reference Atlases Overview of the sagittal and coronal Allen Reference Atlas Study: Mouse Brain
Brain Explorer for the Adult Mouse Brain desktop application for viewing gene expression data in 3D Study: Mouse Brain
AGEA for the Adult Mouse Brain anatomic gene expression atlas Study: Mouse Brain
Allen Adult Mouse Brain Reference Atlas neuroanatomical ontology for determining structural annotation Study: Mouse Brain Reference Data
Brain Explorer desktop application for viewing gene expression data in 3D Study: Human Brain Microarray
Reference Atlas Technical White Paper: Allen Developing Mouse Brain Reference Atlas Study: Developing Mouse Brain
Informatics Data Processing Technical White Paper: Informatics Data Processing for the Allen Developing Mouse Brain Atlas Study: Developing Mouse Brain
Brain Explorer for the Developing Mouse Brain desktop application for viewing gene expression data in 3D Study: Developing Mouse Brain
AGEA for the Developing Mouse Brain anatomic gene expression atlas Study: Developing Mouse Brain
Allen Developing Mouse Brain Reference Atlas neuroanatomical ontology for determining structural annotation across 7 points of time Study: Developing Mouse Brain Reference Data
Overview of methods for BrainSpan Prenatal LCM Microarray Overview of methods for prenatal laser capture microdissection microarray analysis Study: Developing Human Prenatal LMD Microarray
Overview of methods for BrainSpan ISH Overview of methods for In Situ Hybridization studies Study: Developing Human Brain ISH
Gene List for BrainSpan A complete list of genes that was used for this project and the corresponding anatomical structure(s) with ISH data available Study: Developing Human Brain ISH
Acknowledgements for the BrainSpan Project The many people and organizations who have contributed to this project Study: Developing Human Brain ISH
Overview of methods for BrainSpan Developmental Transcriptome Overview of methods for transcriptome profiling Study: Developing Human Transcriptome
BrainSpan Reference Atlas atlas for the developing human brain Study: Developing Human Reference Data
BrainSpan Reference Atlas White Paper Overview of methods for the reference atlas Study: Developing Human Reference Data
BrainSpan Ontology and Nomenclature Rationale and sources for the ontology and anatomic nomenclature Study: Developing Human Reference Data
Reference Dataset Technical white paper describing generation of the reference dataset. Study: Mouse Connectivity Transgenic Characterization
Overview of microarray methods for the NIH Blueprint NHP Atlas Overview of methods for microarray analysis Study: Non-Human Primate Microdissection Microarray
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Reference Atlases

Overview of the sagittal and coronal Allen Reference Atlas

Study: Mouse Brain

Brain Explorer for the Adult Mouse Brain

desktop application for viewing gene expression data in 3D

Study: Mouse Brain

AGEA for the Adult Mouse Brain

anatomic gene expression atlas

Study: Mouse Brain

Allen Adult Mouse Brain Reference Atlas

neuroanatomical ontology for determining structural annotation

Study: Mouse Brain Reference Data

Brain Explorer

desktop application for viewing gene expression data in 3D

Study: Human Brain Microarray

Reference Atlas

Technical White Paper: Allen Developing Mouse Brain Reference Atlas

Study: Developing Mouse Brain

Informatics Data Processing

Technical White Paper: Informatics Data Processing for the Allen Developing Mouse Brain Atlas

Study: Developing Mouse Brain

Brain Explorer for the Developing Mouse Brain

desktop application for viewing gene expression data in 3D

Study: Developing Mouse Brain

AGEA for the Developing Mouse Brain

anatomic gene expression atlas

Study: Developing Mouse Brain

Allen Developing Mouse Brain Reference Atlas

neuroanatomical ontology for determining structural annotation across 7 points of time

Study: Developing Mouse Brain Reference Data

Overview of methods for BrainSpan Prenatal LCM Microarray

Overview of methods for prenatal laser capture microdissection microarray analysis

Study: Developing Human Prenatal LMD Microarray

Overview of methods for BrainSpan ISH

Overview of methods for In Situ Hybridization studies

Study: Developing Human Brain ISH

Gene List for BrainSpan

A complete list of genes that was used for this project and the corresponding anatomical structure(s) with ISH data available

Study: Developing Human Brain ISH

Acknowledgements for the BrainSpan Project

The many people and organizations who have contributed to this project

Study: Developing Human Brain ISH

Overview of methods for BrainSpan Developmental Transcriptome

Overview of methods for transcriptome profiling

Study: Developing Human Transcriptome

BrainSpan Reference Atlas

atlas for the developing human brain

Study: Developing Human Reference Data

BrainSpan Reference Atlas White Paper

Overview of methods for the reference atlas

Study: Developing Human Reference Data

BrainSpan Ontology and Nomenclature

Rationale and sources for the ontology and anatomic nomenclature

Study: Developing Human Reference Data

Reference Dataset

Technical white paper describing generation of the reference dataset.

Study: Mouse Connectivity Transgenic Characterization

Overview of microarray methods for the NIH Blueprint NHP Atlas

Overview of methods for microarray analysis

Study: Non-Human Primate Microdissection Microarray

	Developing Human Brain ISH (1354)
	Developing Human Prenatal LMD Microarray (1352)
	Developing Human Reference Data (1354)
	Developing Human Transcriptome (1352)
	Developing Mouse Brain (2357)
	Developing Mouse Brain Reference Data (2354)
	Glioblastoma (2)
	Human Brain Microarray (1)
	Mouse Brain (1084)
	Mouse Brain Reference Data (1082)
	Mouse Connectivity Projection (1081)
	Mouse Connectivity Transgenic Characterization (1)
	Non-Human Primate ISH (5)
	Non-Human Primate Microdissection Microarray (1)
	Sleep (1081)

	Human (1362)
	Mouse (3444)
	NHP (6)