Allen Brain Atlas

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Results 41 - 60 of 411511	Filters:	Passed QC

Differential gene expression search in Periaqueductal gray Adult Mouse Brain differential gene expression search in Periaqueductal gray Study: Mouse Brain
Differential gene expression search in Pons Adult Mouse Brain differential gene expression search in Pons Study: Mouse Brain
Differential gene expression search in Medulla Adult Mouse Brain differential gene expression search in Medulla Study: Mouse Brain
Differential gene expression search in Inferior olivary complex Adult Mouse Brain differential gene expression search in Inferior olivary complex Study: Mouse Brain
Brain Explorer for the Adult Mouse Brain desktop application for viewing gene expression data in 3D Study: Mouse Brain
AGEA for the Adult Mouse Brain anatomic gene expression atlas Study: Mouse Brain
Allen Adult Mouse Brain Reference Atlas neuroanatomical ontology for determining structural annotation Study: Mouse Brain Reference Data
Whole Brain Microarray Overview of methods for the Whole Brain Microarray Survey. Study: Human Brain Microarray
In Situ Hybridization Overview of methods for ISH studies. Study: Human Brain Microarray
Gene List A complete list of genes characterized by ISH in adult human brain studies Study: Human Brain Microarray
Case Qualification and Donor Profiles Summary of case qualification process and key information about each donor. Study: Human Brain Microarray
Ontology and Nomenclature Rational and sources for the ontology and anatomic nomenclature. Study: Human Brain Microarray
Microarray Platform Selection Technical white paper comparing different microarray platform/service provider options. Study: Human Brain Microarray
Acknowledgement of Funders Recognition of those who provided financial support. Study: Human Brain Microarray
Acknowledgement of Collaborators Recognition of collaborators and others who provided assistance. Study: Human Brain Microarray
FAQ Frequently Asked Questions. Study: Human Brain Microarray
Brain Explorer desktop application for viewing gene expression data in 3D Study: Human Brain Microarray
Overview Technical White Paper: Allen Developing Mouse Brain Atlas Study: Developing Mouse Brain
Reference Atlas Technical White Paper: Allen Developing Mouse Brain Reference Atlas Study: Developing Mouse Brain
Informatics Data Processing Technical White Paper: Informatics Data Processing for the Allen Developing Mouse Brain Atlas Study: Developing Mouse Brain
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Differential gene expression search in Periaqueductal gray

Adult Mouse Brain differential gene expression search in Periaqueductal gray

Study: Mouse Brain

Differential gene expression search in Pons

Adult Mouse Brain differential gene expression search in Pons

Study: Mouse Brain

Differential gene expression search in Medulla

Adult Mouse Brain differential gene expression search in Medulla

Study: Mouse Brain

Differential gene expression search in Inferior olivary complex

Adult Mouse Brain differential gene expression search in Inferior olivary complex

Study: Mouse Brain

Brain Explorer for the Adult Mouse Brain

desktop application for viewing gene expression data in 3D

Study: Mouse Brain

AGEA for the Adult Mouse Brain

anatomic gene expression atlas

Study: Mouse Brain

Allen Adult Mouse Brain Reference Atlas

neuroanatomical ontology for determining structural annotation

Study: Mouse Brain Reference Data

Whole Brain Microarray

Overview of methods for the Whole Brain Microarray Survey.

Study: Human Brain Microarray

In Situ Hybridization

Overview of methods for ISH studies.

Study: Human Brain Microarray

Gene List

A complete list of genes characterized by ISH in adult human brain studies

Study: Human Brain Microarray

Case Qualification and Donor Profiles

Summary of case qualification process and key information about each donor.

Study: Human Brain Microarray

Ontology and Nomenclature

Rational and sources for the ontology and anatomic nomenclature.

Study: Human Brain Microarray

Microarray Platform Selection

Technical white paper comparing different microarray platform/service provider options.

Study: Human Brain Microarray

Acknowledgement of Funders

Recognition of those who provided financial support.

Study: Human Brain Microarray

Acknowledgement of Collaborators

Recognition of collaborators and others who provided assistance.

Study: Human Brain Microarray

FAQ

Frequently Asked Questions.

Study: Human Brain Microarray

Brain Explorer

desktop application for viewing gene expression data in 3D

Study: Human Brain Microarray

Overview

Technical White Paper: Allen Developing Mouse Brain Atlas

Study: Developing Mouse Brain

Reference Atlas

Technical White Paper: Allen Developing Mouse Brain Reference Atlas

Study: Developing Mouse Brain

Informatics Data Processing

Technical White Paper: Informatics Data Processing for the Allen Developing Mouse Brain Atlas

Study: Developing Mouse Brain

1 2 3 4 ... 20575 20576

	Prenatal (106187)
	Juvenile (140531)
	Adult (200808)
	Aged (32892)

	BDA (70)
	Electrophysiology (2336)
	FISH (288)
	IHC (2)
	ISH (132966)
	Microarray (89114)
	RNA Sequencing (174307)
	Resource (38)
	XFP (29)
	viral tracer (3956)

	Aging Dementia TBI - ISH data (1576)
	Aging Dementia TBI - non-ISH data (50281)
	Connectivity projection mapping for cell type characterization (57)
	Developing Human Brain ISH (5107)
	Developing Human Prenatal LMD Microarray (30555)
	Developing Human Reference Data (1377)
	Developing Human Transcriptome (53751)
	Developing Mouse Brain (22651)
	Developing Mouse Brain Reference Data (2372)
	Glioblastoma (20691)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6526)
	Human Brain ISH Neurotransmitter Study (11637)
	Human Brain ISH Schizophrenia Study (3316)
	Human Brain ISH SubCortex Study (1307)
	Human Brain Microarray (30040)
	Human Cell Types (413)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (27284)
	Mouse Brain Reference Data (1093)
	Mouse Cell Types (1931)
	Mouse Cell Types - transcriptomics data (45771)
	Mouse Connectivity Alzheimer (343)
	Mouse Connectivity Alzheimer anterograde Cre-defined (45)
	Mouse Connectivity Alzheimer anterograde Cre-defined SypEGFP (13)
	Mouse Connectivity Alzheimer target-defined anterograde (14)
	Mouse Connectivity BDA/AAV Comparison (171)
	Mouse Connectivity Projection (3648)
	Mouse Connectivity Retina Projection (77)
	Mouse Connectivity Transgenic Characterization (1852)
	Mouse Connectivity Vertical Retina (161)
	Mouse Connectivity aged control (274)
	Mouse Connectivity aged control anterograde Cre-defined (59)
	Mouse Connectivity aged control anterograde Cre-defined SypEGFP (18)
	Mouse Connectivity aged control target-defined anterograde (9)
	Mouse Connectivity anterograde Cre-defined EGFP (222)
	Mouse Connectivity anterograde Cre-defined SypEGFP (206)
	Mouse Spinal Cord (35928)
	Mouse Spinal Cord Reference Data (2)
	Mouse Strains (1047)
	Mouse connectivity target-defined anterograde projectome (associational cortical areas) (150)
	Mouse connectivity target-defined anterograde projectome (visual areas) (72)
	Multi-plane optical physiology during image change detection (121)
	Non-Human Primate ISH (3061)
	Non-Human Primate Macrodissection Microarray (15377)
	Non-Human Primate Microdissection Microarray (15399)
	Non-Human Primate Molecular Map (133)
	Single-plane optical physiology during image change detection (35)
	Single-plane optical physiology during image change detection with reversed training set (28)
	Sleep (2822)
	Transgenic Characterization - serial two-photon tomography (56)
	Visual Behavior Intrinsic Signal Imaging (184)
	Visual Coding Optical Physiology (456)
	Visual Coding Transgenic Characterization serial two-photon tomography (19)

	129/SvJ (10)
	129S1/SvlmJ (117)
	American Indian and Alaska Native (8)
	B6.129 (684)
	B6.129.FVB (35)
	B6.C3H (60)
	B6.FVB (105)
	B6.FVB(ICR) (50)
	B6129PF1/J (4)
	B6129SF1/J (20)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (82358)
	CAST/EiJ (117)
	DBA/2J (117)
	FVB (28)
	FVB.CD1(ICR) (172)
	FVB/NJ (8)
	Non-Hispanic (43)
	PWD/PhJ (93)
	SPRET/EiJ (117)
	WSB/EiJ (93)

	Asian (81691)
	Black or African American (118543)
	European (52376)
	Hispanic (85427)
	Two or more races (52376)
	White or Caucasian (124658)

	Coronal (Caudal to Rostral) (213)
	Dorsal to Ventral (1116)
	Lateral to Medial (3421)
	Medial to Lateral (5314)
	Ventral to Dorsal (7319)
	coronal (31578)
	sagittal (40758)
	variable (37779)

	Alzheimer (334)
	autism (258)
	control (151895)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1875)
	Anterior area layer 4 (3)
	Anterior area layer 5 (1)
	Anterior area layer 6b (1)
	Anterolateral visual area layer 1 (2)
	Anterolateral visual area layer 2/3 (6)
	Anterolateral visual area layer 4 (2)
	Anterolateral visual area layer 5 (5)
	Anterolateral visual area layer 6a (1)
	Anterolateral visual area layer 6b (1)
	Anteromedial visual area layer 1 (1)
	Anteromedial visual area layer 2/3 (3)
	Anteromedial visual area layer 4 (3)
	Anteromedial visual area layer 5 (2)
	Brain (1983)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2837)
	Claustrum/Insula (1226)
	Dorsolateral prefrontal cortex (3762)
	Frontal Cortex (4027)
	Lateral visual area layer 1 (3)
	Lateral visual area layer 2/3 (8)
	Lateral visual area layer 4 (18)
	Lateral visual area layer 5 (34)
	Lateral visual area layer 6a (21)
	Lateral visual area layer 6b (5)
	Laterointermediate area layer 2/3 (4)
	Laterointermediate area layer 4 (3)
	Laterointermediate area layer 5 (7)
	Laterointermediate area layer 6a (4)
	Laterointermediate area layer 6b (1)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	Posterior auditory area layer 5 (2)
	Posterolateral visual area layer 2/3 (3)
	Posterolateral visual area layer 4 (1)
	Posterolateral visual area layer 5 (7)
	Posterolateral visual area layer 6b (10)
	Postrhinal area layer 2/3 (1)
	Postrhinal area layer 4 (4)
	Postrhinal area layer 5 (12)
	Postrhinal area layer 6a (6)
	Postrhinal area layer 6b (2)
	Primary auditory area layer 2/3 (1)
	Primary auditory area layer 6a (1)
	Primary somatosensory area barrel field layer 2/3 (1)
	Primary somatosensory area barrel field layer 4 (2)
	Primary somatosensory area barrel field layer 5 (2)
	Primary somatosensory area layer 6b (1)
	Primary somatosensory area nose layer 4 (1)
	Primary somatosensory area trunk layer 4 (3)
	Primary somatosensory area trunk layer 5 (1)
	Primary somatosensory area unassigned layer 5 (1)
	Primary visual area layer 1 (42)
	Primary visual area layer 2/3 (311)
	Primary visual area layer 4 (458)
	Primary visual area layer 5 (505)
	Primary visual area layer 6a (224)
	Primary visual area layer 6b (48)
	Retina (161)
	Retrosplenial area dorsal part layer 2/3 (3)
	Retrosplenial area dorsal part layer 5 (6)
	Retrosplenial area dorsal part layer 6a (10)
	Retrosplenial area lateral agranular part layer 1 (2)
	Retrosplenial area lateral agranular part layer 2/3 (6)
	Retrosplenial area lateral agranular part layer 5 (6)
	Retrosplenial area lateral agranular part layer 6a (5)
	Retrosplenial area ventral part layer 5 (1)
	Retrosplenial area ventral part layer 6a (1)
	Rostrolateral area layer 2/3 (1)
	Rostrolateral area layer 4 (1)
	Rostrolateral area layer 6a (1)
	SubCortex (1142)
	Temporal association areas layer 4 (1)
	Temporal association areas layer 6a (1)
	Temporal cortex (3334)
	Ventral Anterior Cingulate (20)
	Ventral striatum (787)
	Visual Cortex (801)
	Visual cortex (3217)
	amygdaloid complex (576)
	angular gyrus (16)
	brain (173)
	frontal lobe (6008)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	inferior frontal gyrus (4)
	inferior temporal gyrus (15)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (713)
	middle frontal gyrus (26)
	middle temporal gyrus (309)
	occipital cortex (576)
	occipital lobe (978)
	parietal lobe (7323)
	parietal neocortex (498)
	planum polare (6)
	posteromedial visual area layer 1 (8)
	posteromedial visual area layer 2/3 (31)
	posteromedial visual area layer 4 (19)
	posteromedial visual area layer 5 (24)
	posteromedial visual area layer 6a (6)
	posteromedial visual area layer 6b (1)
	superior frontal gyrus (3)
	temporal lobe (5934)
	temporal neocortex (550)
	ventral striatum (576)

	Human (238006)
	Mouse (139668)
	NHP (33837)

	Female (173221)
	Male (282788)

	Passed QC (411511)
	Failed QC (4607)