Allen Brain Atlas

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viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 292123352, B6.129, "tissuecyte, IR, Power, (W), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Slc17a6-IRES-Cre - Medial preoptic area, MPO, MPN, BST, PD, AVP" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 167200755, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Chat-IRES-Cre-neo - Diagonal band nucleus, NDB, SI, LPO, MPO" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 167201465, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Pvalb-IRES-Cre - Ansiform lobule, AN, SIM, DEC" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, P83, coronal Experiment: 307742524, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Nxph4-T2A-CreERT2 - Interposed nucleus, IP, SUV, DCO, NOD, VeCB" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 166459778, B6.C3H, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Scnn1a-Tg3-Cre - Anterolateral visual area, VISal, VISl" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P65, coronal Experiment: 287712779, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Nxph4-T2A-CreERT2 - Periaqueductal gray, PAG, MRN, DR, IV" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, P75, coronal Experiment: 586054741, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Adcyap1-2A-Cre - Posterior intralaminar thalamic nucleus, PIL, PP, PoT, MRN, MG, POL, SPFp" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 168401109, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Anterior cingulate area, ventral part, ACAv, ACAd" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 292035484, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Slc17a6-IRES-Cre - Anterior hypothalamic nucleus, AHN, AM, PeF, RE, RT, PR, ZI, LHA" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 147790922, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Oxt-IRES-Cre - Supraoptic nucleus, SO, LHA" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 167202174, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm)", "Pvalb-IRES-Cre - Culmen, CUL, CENT" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 167211503, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Ventral cochlear nucleus, VCO, DCO" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 278317239, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Cux2-IRES-Cre - Entorhinal area, lateral part, ENTl, ENTm" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 10 wks, coronal Experiment: 171064488, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Slc32a1-IRES-Cre - Reticular nucleus of the thalamus, RT" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 181116850, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Gabra6-IRES-Cre - Ansiform lobule, AN" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, P75, coronal Experiment: 127085005, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Reticular nucleus of the thalamus, RT" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, P65, coronal Experiment: 287714197, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Nxph4-T2A-CreERT2 - Inferior colliculus, IC, MRN, SCm, NB" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 158138440, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Secondary motor area, MOs, MOp" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P75, coronal Experiment: 478819500, B6.FVB, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm)", "Dlg3-Cre_KG118 - Tegmental reticular nucleus, TRN, PRNc, PG, PRNr, RM" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 12 wks, coronal Experiment: 177605425, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Chat-IRES-Cre-neo - Diagonal band nucleus, NDB, MS, AVPV, LSr" Study: Mouse Connectivity Projection
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viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 292123352, B6.129, "tissuecyte, IR, Power, (W), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Slc17a6-IRES-Cre - Medial preoptic area, MPO, MPN, BST, PD, AVP"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 167200755, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Chat-IRES-Cre-neo - Diagonal band nucleus, NDB, SI, LPO, MPO"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 167201465, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Pvalb-IRES-Cre - Ansiform lobule, AN, SIM, DEC"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, P83, coronal

Experiment: 307742524, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Nxph4-T2A-CreERT2 - Interposed nucleus, IP, SUV, DCO, NOD, VeCB"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 166459778, B6.C3H, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Scnn1a-Tg3-Cre - Anterolateral visual area, VISal, VISl"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P65, coronal

Experiment: 287712779, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Nxph4-T2A-CreERT2 - Periaqueductal gray, PAG, MRN, DR, IV"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, P75, coronal

Experiment: 586054741, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Adcyap1-2A-Cre - Posterior intralaminar thalamic nucleus, PIL, PP, PoT, MRN, MG, POL, SPFp"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 168401109, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Anterior cingulate area, ventral part, ACAv, ACAd"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 292035484, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Slc17a6-IRES-Cre - Anterior hypothalamic nucleus, AHN, AM, PeF, RE, RT, PR, ZI, LHA"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 147790922, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Oxt-IRES-Cre - Supraoptic nucleus, SO, LHA"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 167202174, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm)", "Pvalb-IRES-Cre - Culmen, CUL, CENT"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 167211503, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Ventral cochlear nucleus, VCO, DCO"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 278317239, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Cux2-IRES-Cre - Entorhinal area, lateral part, ENTl, ENTm"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 10 wks, coronal

Experiment: 171064488, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Slc32a1-IRES-Cre - Reticular nucleus of the thalamus, RT"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 181116850, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Gabra6-IRES-Cre - Ansiform lobule, AN"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, P75, coronal

Experiment: 127085005, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Reticular nucleus of the thalamus, RT"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, P65, coronal

Experiment: 287714197, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Nxph4-T2A-CreERT2 - Inferior colliculus, IC, MRN, SCm, NB"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 158138440, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Secondary motor area, MOs, MOp"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P75, coronal

Experiment: 478819500, B6.FVB, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm)", "Dlg3-Cre_KG118 - Tegmental reticular nucleus, TRN, PRNc, PG, PRNr, RM"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 12 wks, coronal

Experiment: 177605425, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Chat-IRES-Cre-neo - Diagonal band nucleus, NDB, MS, AVPV, LSr"

Study: Mouse Connectivity Projection

	Prenatal (27)
	Juvenile (225)
	Adult (828)
	Aged (10)

	FISH (104)
	ISH (450)
	Microarray (24)
	RNA Sequencing (31)
	XFP (6)
	viral tracer (462)

	Aging Dementia TBI - non-ISH data (10)
	Developing Human Prenatal LMD Microarray (7)
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	Developing Mouse Brain (21)
	Glioblastoma (9)
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	Human Glioblastoma RNASeq (8)
	Mouse Brain (13)
	Mouse Cell Types - transcriptomics data (8)
	Mouse Connectivity Projection (438)
	Mouse Connectivity Transgenic Characterization (512)
	Mouse Connectivity anterograde Cre-defined EGFP (12)
	Mouse Connectivity anterograde Cre-defined SypEGFP (11)
	Mouse Spinal Cord (10)
	Non-Human Primate Macrodissection Microarray (5)
	Non-Human Primate Microdissection Microarray (5)
	Transgenic Characterization - serial two-photon tomography (1)

	B6.129 (700)
	B6.129.FVB (44)
	B6.C3H (61)
	B6.FVB (114)
	B6.FVB(ICR) (51)
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	C57BL/6J (40)

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	coronal (764)
	sagittal (240)
	variable (11)

	Brain (512)
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	Human (46)
	Mouse (1022)
	NHP (10)

	Female (450)
	Male (636)

	control (24)
	glioblastoma (16)

	Passed QC (1041)
	Failed QC (37)