Allen Brain Atlas

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viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 287667137, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Fezf1-T2A-dCre - Lateral hypothalamic area, LHA, PeF, TU, SI, MEA, ZI" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 161460864, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Chat-IRES-Cre-neo - Substantia innominata, SI, ACB, BST, LPO, NDB, MA, CP, FS" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 12 wks, coronal Experiment: 267540168, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm)", "Fezf1-T2A-dCre - Ventromedial hypothalamic nucleus, VMH, DMH, TU, PVi, ARH" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 267997620, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm)", "Avp-IRES2-Cre - Paraventricular hypothalamic nucleus, PVH, PVHd, RE, PR, SMT" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P80, coronal Experiment: 300622004, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Nos1-CreERT2 - Simple lobule, SIM" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 12 wks, coronal Experiment: 305071285, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, IR, Power, (W), tissuecyte, PMT, (V)", "Nos1-CreERT2 - Parasubiculum, PAR, ENTm, APr" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P81, coronal Experiment: 311846681, B6.FVB, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Th-Cre_FI172 - Spinal nucleus of the trigeminal, caudal part, SPVC" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 113506174, B6.129.FVB, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Pmch-Cre - Lateral hypothalamic area, LHA, ZI, PeF, PST, PVHd, AHN" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 160396450, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", Failed QC, "Lepr-IRES-Cre - Supramammillary nucleus, lateral part, SUMl, LHA, VTA, SNc" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 12 wks, coronal Experiment: 167656152, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Lepr-IRES-Cre - Ventral premammillary nucleus, PMv, TMv, LM, SUM, PVp" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 305320171, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Slc32a1-IRES-Cre - Dentate gyrus, DG, CA3, CA1, CA2" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 266962653, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Slc17a6-IRES-Cre - Cortical amygdalar area, posterior part, COAp, BMA, PA" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 278433737, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Cux2-IRES-Cre - Prelimbic area, PL, ILA, ACAd" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P75, coronal Experiment: 478818791, B6.FVB, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Dlg3-Cre_KG118 - Tegmental reticular nucleus, TRN" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 241279261, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Tac2-IRES2-Cre - Central amygdalar nucleus, CEA, SI, MEA, GPi" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 286556208, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Slc17a6-IRES-Cre - Ventromedial hypothalamic nucleus, VMH, DMH, PH" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P84, coronal Experiment: 478096249, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Rasgrf2-T2A-dCre - Substantia nigra, reticular part, SNr, MRN, PIL, SNc, PP" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 159374329, B6.129, "tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Slc17a6-IRES-Cre - Subiculum, SUB, POST, ProS, VISp" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 160296448, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Lepr-IRES-Cre - Dorsomedial nucleus of the hypothalamus, DMH, PMv, PH, VMH, LHA, TU" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 294313246, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Tac1-IRES2-Cre - Anterior olfactory nucleus, AON, PIR, ORBl, ORBvl" Study: Mouse Connectivity Projection
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viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 287667137, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Fezf1-T2A-dCre - Lateral hypothalamic area, LHA, PeF, TU, SI, MEA, ZI"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 161460864, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Chat-IRES-Cre-neo - Substantia innominata, SI, ACB, BST, LPO, NDB, MA, CP, FS"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 12 wks, coronal

Experiment: 267540168, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm)", "Fezf1-T2A-dCre - Ventromedial hypothalamic nucleus, VMH, DMH, TU, PVi, ARH"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 267997620, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm)", "Avp-IRES2-Cre - Paraventricular hypothalamic nucleus, PVH, PVHd, RE, PR, SMT"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P80, coronal

Experiment: 300622004, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Nos1-CreERT2 - Simple lobule, SIM"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 12 wks, coronal

Experiment: 305071285, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, IR, Power, (W), tissuecyte, PMT, (V)", "Nos1-CreERT2 - Parasubiculum, PAR, ENTm, APr"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P81, coronal

Experiment: 311846681, B6.FVB, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Th-Cre_FI172 - Spinal nucleus of the trigeminal, caudal part, SPVC"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 113506174, B6.129.FVB, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Pmch-Cre - Lateral hypothalamic area, LHA, ZI, PeF, PST, PVHd, AHN"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 160396450, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", Failed QC, "Lepr-IRES-Cre - Supramammillary nucleus, lateral part, SUMl, LHA, VTA, SNc"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 12 wks, coronal

Experiment: 167656152, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Lepr-IRES-Cre - Ventral premammillary nucleus, PMv, TMv, LM, SUM, PVp"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 305320171, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Slc32a1-IRES-Cre - Dentate gyrus, DG, CA3, CA1, CA2"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 266962653, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Slc17a6-IRES-Cre - Cortical amygdalar area, posterior part, COAp, BMA, PA"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 278433737, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Cux2-IRES-Cre - Prelimbic area, PL, ILA, ACAd"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P75, coronal

Experiment: 478818791, B6.FVB, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Dlg3-Cre_KG118 - Tegmental reticular nucleus, TRN"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 241279261, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Tac2-IRES2-Cre - Central amygdalar nucleus, CEA, SI, MEA, GPi"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 286556208, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Slc17a6-IRES-Cre - Ventromedial hypothalamic nucleus, VMH, DMH, PH"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P84, coronal

Experiment: 478096249, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Rasgrf2-T2A-dCre - Substantia nigra, reticular part, SNr, MRN, PIL, SNc, PP"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 159374329, B6.129, "tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Slc17a6-IRES-Cre - Subiculum, SUB, POST, ProS, VISp"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 160296448, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Lepr-IRES-Cre - Dorsomedial nucleus of the hypothalamus, DMH, PMv, PH, VMH, LHA, TU"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 294313246, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Tac1-IRES2-Cre - Anterior olfactory nucleus, AON, PIR, ORBl, ORBvl"

Study: Mouse Connectivity Projection

	Prenatal (27)
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	Adult (828)
	Aged (10)

	FISH (104)
	ISH (450)
	Microarray (24)
	RNA Sequencing (31)
	XFP (6)
	viral tracer (462)

	Aging Dementia TBI - non-ISH data (10)
	Developing Human Prenatal LMD Microarray (7)
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	Developing Mouse Brain (21)
	Glioblastoma (9)
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	Human Glioblastoma RNASeq (8)
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	Mouse Cell Types - transcriptomics data (8)
	Mouse Connectivity Projection (438)
	Mouse Connectivity Transgenic Characterization (512)
	Mouse Connectivity anterograde Cre-defined EGFP (12)
	Mouse Connectivity anterograde Cre-defined SypEGFP (11)
	Mouse Spinal Cord (10)
	Non-Human Primate Macrodissection Microarray (5)
	Non-Human Primate Microdissection Microarray (5)
	Transgenic Characterization - serial two-photon tomography (1)

	B6.129 (700)
	B6.129.FVB (44)
	B6.C3H (61)
	B6.FVB (114)
	B6.FVB(ICR) (51)
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	C57BL/6J (40)

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	Dorsal to Ventral (1)
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	coronal (764)
	sagittal (240)
	variable (11)

	Brain (512)
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	Human (46)
	Mouse (1022)
	NHP (10)

	Female (450)
	Male (636)

	control (24)
	glioblastoma (16)

	Passed QC (1041)
	Failed QC (37)