Allen Brain Atlas

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Nr5a1 ISH: Mus musculus, Male, P56, coronal Nr5a1, Experiment: 734, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pitx1 ISH: Mus musculus, Male, P56, coronal paired-like homeodomain transcription factor 1, entrez_id: 18740, Experiment: 199398, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ikzf1 ISH: Mus musculus, Male, P56, sagittal Ikzf1, Experiment: 1146, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cd9 ISH: Mus musculus, Male, P56, sagittal CD9 antigen, entrez_id: 12527, Experiment: 69540635, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Htr3b ISH: Mus musculus, Male, P56, coronal 5-hydroxytryptamine (serotonin) receptor 3B, entrez_id: 57014, Experiment: 74641318, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Six1 ISH: Mus musculus, Male, P56, coronal Six1, Experiment: 1834, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Glul ISH: Mus musculus, Male, P56, sagittal glutamate-ammonia ligase (glutamine synthetase), entrez_id: 14645, Experiment: 70919872, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
C230009H10Rik ISH: Mus musculus, Male, P56, coronal RIKEN cDNA C230009H10 gene, entrez_id: 320399, Experiment: 72472761, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Inpp4b ISH: Mus musculus, Male, P56, coronal "inositol polyphosphate-4-phosphatase, type II", entrez_id: 234515, Experiment: 72080054, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Aldh2 ISH: Mus musculus, Male, P56, sagittal "aldehyde dehydrogenase 2, mitochondrial", entrez_id: 11669, Experiment: 68443064, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Bdnf ISH: Mus musculus, Male, P56, sagittal Bdnf, Experiment: 158, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Ddc ISH: Mus musculus, Male, P56, coronal dopa decarboxylase, entrez_id: 13195, Experiment: 79556614, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tox ISH: Mus musculus, Male, P56, coronal thymocyte selection-associated high mobility group box, entrez_id: 252838, Experiment: 71670691, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Igfbp4 ISH: Mus musculus, Male, P56, sagittal insulin-like growth factor binding protein 4, entrez_id: 16010, Experiment: 70431391, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Trps1 ISH: Mus musculus, Male, P56, sagittal trichorhinophalangeal syndrome I (human), entrez_id: 83925, Experiment: 80514159, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Fgf2 ISH: Mus musculus, Male, P56, sagittal fibroblast growth factor 2, entrez_id: 14173, Experiment: 75990403, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
LOC433436 ISH: Mus musculus, Male, P56, coronal "similar to titin isoform N2-A; connectin; CMH9, included; cardiomyopathy, dilated 1G (autosomal dominant)", entrez_id: 433436, Experiment: 73636096, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ncoa1 ISH: Mus musculus, Male, P56, sagittal nuclear receptor coactivator 1, entrez_id: 17977, Experiment: 69289471, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gsc ISH: Mus musculus, Male, P56, sagittal goosecoid homeobox, entrez_id: 14836, Experiment: 81655566, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Sfrp1 ISH: Mus musculus, Male, P56, coronal Sfrp1, Experiment: 2563, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Nr5a1 ISH: Mus musculus, Male, P56, coronal

Nr5a1, Experiment: 734, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pitx1 ISH: Mus musculus, Male, P56, coronal

paired-like homeodomain transcription factor 1, entrez_id: 18740, Experiment: 199398, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ikzf1 ISH: Mus musculus, Male, P56, sagittal

Ikzf1, Experiment: 1146, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cd9 ISH: Mus musculus, Male, P56, sagittal

CD9 antigen, entrez_id: 12527, Experiment: 69540635, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Htr3b ISH: Mus musculus, Male, P56, coronal

5-hydroxytryptamine (serotonin) receptor 3B, entrez_id: 57014, Experiment: 74641318, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Six1 ISH: Mus musculus, Male, P56, coronal

Six1, Experiment: 1834, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Glul ISH: Mus musculus, Male, P56, sagittal

glutamate-ammonia ligase (glutamine synthetase), entrez_id: 14645, Experiment: 70919872, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

C230009H10Rik ISH: Mus musculus, Male, P56, coronal

RIKEN cDNA C230009H10 gene, entrez_id: 320399, Experiment: 72472761, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Inpp4b ISH: Mus musculus, Male, P56, coronal

"inositol polyphosphate-4-phosphatase, type II", entrez_id: 234515, Experiment: 72080054, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Aldh2 ISH: Mus musculus, Male, P56, sagittal

"aldehyde dehydrogenase 2, mitochondrial", entrez_id: 11669, Experiment: 68443064, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Bdnf ISH: Mus musculus, Male, P56, sagittal

Bdnf, Experiment: 158, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Ddc ISH: Mus musculus, Male, P56, coronal

dopa decarboxylase, entrez_id: 13195, Experiment: 79556614, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tox ISH: Mus musculus, Male, P56, coronal

thymocyte selection-associated high mobility group box, entrez_id: 252838, Experiment: 71670691, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Igfbp4 ISH: Mus musculus, Male, P56, sagittal

insulin-like growth factor binding protein 4, entrez_id: 16010, Experiment: 70431391, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Trps1 ISH: Mus musculus, Male, P56, sagittal

trichorhinophalangeal syndrome I (human), entrez_id: 83925, Experiment: 80514159, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Fgf2 ISH: Mus musculus, Male, P56, sagittal

fibroblast growth factor 2, entrez_id: 14173, Experiment: 75990403, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

LOC433436 ISH: Mus musculus, Male, P56, coronal

"similar to titin isoform N2-A; connectin; CMH9, included; cardiomyopathy, dilated 1G (autosomal dominant)", entrez_id: 433436, Experiment: 73636096, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ncoa1 ISH: Mus musculus, Male, P56, sagittal

nuclear receptor coactivator 1, entrez_id: 17977, Experiment: 69289471, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gsc ISH: Mus musculus, Male, P56, sagittal

goosecoid homeobox, entrez_id: 14836, Experiment: 81655566, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Sfrp1 ISH: Mus musculus, Male, P56, coronal

Sfrp1, Experiment: 2563, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)