Allen Brain Atlas

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Tulp4 ISH: Mus musculus, Male, P56, sagittal Tulp4, Experiment: 2700, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Calb2 ISH: Mus musculus, Male, P56, coronal Calb2, Experiment: 177, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Smoc2 ISH: Mus musculus, Male, P56, coronal SPARC related modular calcium binding 2, entrez_id: 64074, Experiment: 74357576, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Sox11 ISH: Mus musculus, Male, P56, coronal Sox11, Experiment: 1000, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Gcm1 ISH: Mus musculus, Male, P56, sagittal glial cells missing homolog 1 (Drosophila), entrez_id: 14531, Experiment: 69289045, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Camk2a ISH: Mus musculus, Male, P56, coronal calcium/calmodulin-dependent protein kinase II alpha, entrez_id: 12322, Experiment: 83160, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Ctsr ISH: Mus musculus, Male, P56, sagittal cathepsin R, entrez_id: 56835, Experiment: 71919230, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Cebpe ISH: Mus musculus, Male, P56, sagittal "CCAAT/enhancer binding protein (C/EBP), epsilon", entrez_id: 110794, Experiment: 71021147, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dmbx1 ISH: Mus musculus, Male, P56, sagittal Dmbx1, Experiment: 1485, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dnmt3l ISH: Mus musculus, Male, P56, sagittal Dnmt3l, Experiment: 73716572, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Acvrl1 ISH: Mus musculus, Male, P56, sagittal Acvrl1, Experiment: 2015, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Pdzd2 ISH: Mus musculus, Male, P56, sagittal PDZ domain containing 2, entrez_id: 68070, Experiment: 70300726, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Htr2a ISH: Mus musculus, Male, P56, sagittal 5-hydroxytryptamine (serotonin) receptor 2A, entrez_id: 15558, Experiment: 81671344, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Scn4b ISH: Mus musculus, Male, P56, sagittal "sodium channel, type IV, beta", entrez_id: 399548, Experiment: 71487184, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Snw1 ISH: Mus musculus, Male, P56, sagittal SNW domain containing 1, entrez_id: 66354, Experiment: 77925165, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Slc18a1 ISH: Mus musculus, Male, P56, sagittal "solute carrier family 18 (vesicular monoamine), member 1", entrez_id: 110877, Experiment: 76098391, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cst3 ISH: Mus musculus, Male, P56, sagittal cystatin C, entrez_id: 13010, Experiment: 75496721, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Syt10 ISH: Mus musculus, Male, P56, sagittal Syt10, Experiment: 1018, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Bmp4 ISH: Mus musculus, Male, P56, sagittal bone morphogenetic protein 4, entrez_id: 12159, Experiment: 79669531, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Glul ISH: Mus musculus, Male, P56, coronal glutamate-ammonia ligase (glutamine synthetase), entrez_id: 14645, Experiment: 74047918, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Tulp4 ISH: Mus musculus, Male, P56, sagittal

Tulp4, Experiment: 2700, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Calb2 ISH: Mus musculus, Male, P56, coronal

Calb2, Experiment: 177, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Smoc2 ISH: Mus musculus, Male, P56, coronal

SPARC related modular calcium binding 2, entrez_id: 64074, Experiment: 74357576, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Sox11 ISH: Mus musculus, Male, P56, coronal

Sox11, Experiment: 1000, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Gcm1 ISH: Mus musculus, Male, P56, sagittal

glial cells missing homolog 1 (Drosophila), entrez_id: 14531, Experiment: 69289045, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Camk2a ISH: Mus musculus, Male, P56, coronal

calcium/calmodulin-dependent protein kinase II alpha, entrez_id: 12322, Experiment: 83160, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Ctsr ISH: Mus musculus, Male, P56, sagittal

cathepsin R, entrez_id: 56835, Experiment: 71919230, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Cebpe ISH: Mus musculus, Male, P56, sagittal

"CCAAT/enhancer binding protein (C/EBP), epsilon", entrez_id: 110794, Experiment: 71021147, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dmbx1 ISH: Mus musculus, Male, P56, sagittal

Dmbx1, Experiment: 1485, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dnmt3l ISH: Mus musculus, Male, P56, sagittal

Dnmt3l, Experiment: 73716572, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Acvrl1 ISH: Mus musculus, Male, P56, sagittal

Acvrl1, Experiment: 2015, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Pdzd2 ISH: Mus musculus, Male, P56, sagittal

PDZ domain containing 2, entrez_id: 68070, Experiment: 70300726, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Htr2a ISH: Mus musculus, Male, P56, sagittal

5-hydroxytryptamine (serotonin) receptor 2A, entrez_id: 15558, Experiment: 81671344, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Scn4b ISH: Mus musculus, Male, P56, sagittal

"sodium channel, type IV, beta", entrez_id: 399548, Experiment: 71487184, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Snw1 ISH: Mus musculus, Male, P56, sagittal

SNW domain containing 1, entrez_id: 66354, Experiment: 77925165, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Slc18a1 ISH: Mus musculus, Male, P56, sagittal

"solute carrier family 18 (vesicular monoamine), member 1", entrez_id: 110877, Experiment: 76098391, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cst3 ISH: Mus musculus, Male, P56, sagittal

cystatin C, entrez_id: 13010, Experiment: 75496721, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Syt10 ISH: Mus musculus, Male, P56, sagittal

Syt10, Experiment: 1018, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Bmp4 ISH: Mus musculus, Male, P56, sagittal

bone morphogenetic protein 4, entrez_id: 12159, Experiment: 79669531, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Glul ISH: Mus musculus, Male, P56, coronal

glutamate-ammonia ligase (glutamine synthetase), entrez_id: 14645, Experiment: 74047918, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)