Allen Brain Atlas

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Ebf1 ISH: Mus musculus, Male, P56, coronal Ebf1, Experiment: 377, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Alx3 ISH: Mus musculus, Male, P56, sagittal aristaless-like homeobox 3, entrez_id: 11694, Experiment: 77464960, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Efnb1 ISH: Mus musculus, Male, P56, sagittal Efnb1, Experiment: 100142516, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cdk5r1 ISH: Mus musculus, Male, P56, sagittal Cdk5r1, Experiment: 248, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Deptor ISH: Mus musculus, Male, P56, coronal DEP domain containing MTOR-interacting protein, entrez_id: 97998, Experiment: 76135830, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Col9a3 ISH: Mus musculus, Male, P56, sagittal "collagen, type IX, alpha 3", entrez_id: 12841, Experiment: 68080681, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Slc18a1 ISH: Mus musculus, Male, P56, coronal Slc18a1, Experiment: 2583, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cxxc4 ISH: Mus musculus, Male, P56, sagittal CXXC finger 4, entrez_id: 319478, Experiment: 74277639, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Zfp46 ISH: Mus musculus, Male, P56, sagittal zinc finger protein 46, entrez_id: 22704, Experiment: 68203460, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pex5l ISH: Mus musculus, Male, P56, coronal peroxisomal biogenesis factor 5-like, entrez_id: 58869, Experiment: 74581447, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Phox2b ISH: Mus musculus, Male, P56, coronal Phox2b, Experiment: 2480, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cds1 ISH: Mus musculus, Male, P56, coronal CDP-diacylglycerol synthase 1, entrez_id: 74596, Experiment: 72103808, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ngf ISH: Mus musculus, Male, P56, coronal nerve growth factor, entrez_id: 18049, Experiment: 74581384, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cyp26b1 ISH: Mus musculus, Male, P56, coronal "cytochrome P450, family 26, subfamily b, polypeptide 1", entrez_id: 232174, Experiment: 79568022, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Kif5c ISH: Mus musculus, Male, P56, sagittal kinesin family member 5C, entrez_id: 16574, Experiment: 69735801, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Aqp4 ISH: Mus musculus, Male, P56, sagittal Aqp4, Experiment: 109, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Hap1 ISH: Mus musculus, Male, P56, sagittal Hap1, Experiment: 550, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Pou4f1 ISH: Mus musculus, Male, P56, sagittal "POU domain, class 4, transcription factor 1", entrez_id: 18996, Experiment: 71280601, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Mst1 ISH: Mus musculus, Male, P56, sagittal macrophage stimulating 1 (hepatocyte growth factor-like), entrez_id: 15235, Experiment: 72076397, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Dpysl5 ISH: Mus musculus, Male, P56, sagittal dihydropyrimidinase-like 5, entrez_id: 65254, Experiment: 71587595, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Ebf1 ISH: Mus musculus, Male, P56, coronal

Ebf1, Experiment: 377, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Alx3 ISH: Mus musculus, Male, P56, sagittal

aristaless-like homeobox 3, entrez_id: 11694, Experiment: 77464960, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Efnb1 ISH: Mus musculus, Male, P56, sagittal

Efnb1, Experiment: 100142516, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cdk5r1 ISH: Mus musculus, Male, P56, sagittal

Cdk5r1, Experiment: 248, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Deptor ISH: Mus musculus, Male, P56, coronal

DEP domain containing MTOR-interacting protein, entrez_id: 97998, Experiment: 76135830, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Col9a3 ISH: Mus musculus, Male, P56, sagittal

"collagen, type IX, alpha 3", entrez_id: 12841, Experiment: 68080681, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Slc18a1 ISH: Mus musculus, Male, P56, coronal

Slc18a1, Experiment: 2583, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cxxc4 ISH: Mus musculus, Male, P56, sagittal

CXXC finger 4, entrez_id: 319478, Experiment: 74277639, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Zfp46 ISH: Mus musculus, Male, P56, sagittal

zinc finger protein 46, entrez_id: 22704, Experiment: 68203460, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pex5l ISH: Mus musculus, Male, P56, coronal

peroxisomal biogenesis factor 5-like, entrez_id: 58869, Experiment: 74581447, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Phox2b ISH: Mus musculus, Male, P56, coronal

Phox2b, Experiment: 2480, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cds1 ISH: Mus musculus, Male, P56, coronal

CDP-diacylglycerol synthase 1, entrez_id: 74596, Experiment: 72103808, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ngf ISH: Mus musculus, Male, P56, coronal

nerve growth factor, entrez_id: 18049, Experiment: 74581384, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cyp26b1 ISH: Mus musculus, Male, P56, coronal

"cytochrome P450, family 26, subfamily b, polypeptide 1", entrez_id: 232174, Experiment: 79568022, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Kif5c ISH: Mus musculus, Male, P56, sagittal

kinesin family member 5C, entrez_id: 16574, Experiment: 69735801, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Aqp4 ISH: Mus musculus, Male, P56, sagittal

Aqp4, Experiment: 109, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Hap1 ISH: Mus musculus, Male, P56, sagittal

Hap1, Experiment: 550, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Pou4f1 ISH: Mus musculus, Male, P56, sagittal

"POU domain, class 4, transcription factor 1", entrez_id: 18996, Experiment: 71280601, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Mst1 ISH: Mus musculus, Male, P56, sagittal

macrophage stimulating 1 (hepatocyte growth factor-like), entrez_id: 15235, Experiment: 72076397, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Dpysl5 ISH: Mus musculus, Male, P56, sagittal

dihydropyrimidinase-like 5, entrez_id: 65254, Experiment: 71587595, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)