Allen Brain Atlas

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Foxg1 ISH: Mus musculus, Male, P56, coronal Foxg1, Experiment: 2230, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cdh13 ISH: Mus musculus, Male, P56, sagittal cadherin 13, entrez_id: 12554, Experiment: 68196960, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Smad4 ISH: Mus musculus, Male, P56, sagittal SMAD family member 4, entrez_id: 17128, Experiment: 71656698, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Hoxd3 ISH: Mus musculus, Male, P56, sagittal homeobox D3, entrez_id: 15434, Experiment: 69289183, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gpr98 ISH: Mus musculus, Male, P56, sagittal G protein-coupled receptor 98, entrez_id: 110789, Experiment: 68920785, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cd59a ISH: Mus musculus, Male, P56, sagittal CD59a antigen, entrez_id: 12509, Experiment: 69540605, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ctgf ISH: Mus musculus, Male, P56, sagittal Ctgf, Experiment: 1184, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ngf ISH: Mus musculus, Male, P56, sagittal nerve growth factor, entrez_id: 18049, Experiment: 76097720, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Tulp4 ISH: Mus musculus, Male, P56, coronal Tulp4, Experiment: 2699, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Scube1 ISH: Mus musculus, Male, P56, coronal "signal peptide, CUB domain, EGF-like 1", entrez_id: 64706, Experiment: 73512351, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Hdac6 ISH: Mus musculus, Male, P56, sagittal histone deacetylase 6, entrez_id: 15185, Experiment: 69838113, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nr2f2 ISH: Mus musculus, Male, P56, sagittal "nuclear receptor subfamily 2, group F, member 2", entrez_id: 11819, Experiment: 73606594, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Prlr ISH: Mus musculus, Male, P56, coronal Prlr, Experiment: 1268, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ros1 ISH: Mus musculus, Male, P56, sagittal Ros1 proto-oncogene, entrez_id: 19886, Experiment: 69818281, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Loxl2 ISH: Mus musculus, Male, P56, coronal lysyl oxidase-like 2, entrez_id: 94352, Experiment: 71670486, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cdh20 ISH: Mus musculus, Male, P56, sagittal cadherin 20, entrez_id: 23836, Experiment: 77464878, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tsc22d4 ISH: Mus musculus, Male, P56, sagittal Tsc22d4, Experiment: 74581363, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Col6a1 ISH: Mus musculus, Male, P56, coronal Col6a1, Experiment: 290, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nhlh1 ISH: Mus musculus, Male, P56, sagittal nescient helix loop helix 1, entrez_id: 18071, Experiment: 71656703, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Sstr4 ISH: Mus musculus, Male, P56, coronal somatostatin receptor 4, entrez_id: 20608, Experiment: 73636037, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Foxg1 ISH: Mus musculus, Male, P56, coronal

Foxg1, Experiment: 2230, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cdh13 ISH: Mus musculus, Male, P56, sagittal

cadherin 13, entrez_id: 12554, Experiment: 68196960, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Smad4 ISH: Mus musculus, Male, P56, sagittal

SMAD family member 4, entrez_id: 17128, Experiment: 71656698, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Hoxd3 ISH: Mus musculus, Male, P56, sagittal

homeobox D3, entrez_id: 15434, Experiment: 69289183, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gpr98 ISH: Mus musculus, Male, P56, sagittal

G protein-coupled receptor 98, entrez_id: 110789, Experiment: 68920785, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cd59a ISH: Mus musculus, Male, P56, sagittal

CD59a antigen, entrez_id: 12509, Experiment: 69540605, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ctgf ISH: Mus musculus, Male, P56, sagittal

Ctgf, Experiment: 1184, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ngf ISH: Mus musculus, Male, P56, sagittal

nerve growth factor, entrez_id: 18049, Experiment: 76097720, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Tulp4 ISH: Mus musculus, Male, P56, coronal

Tulp4, Experiment: 2699, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Scube1 ISH: Mus musculus, Male, P56, coronal

"signal peptide, CUB domain, EGF-like 1", entrez_id: 64706, Experiment: 73512351, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Hdac6 ISH: Mus musculus, Male, P56, sagittal

histone deacetylase 6, entrez_id: 15185, Experiment: 69838113, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nr2f2 ISH: Mus musculus, Male, P56, sagittal

"nuclear receptor subfamily 2, group F, member 2", entrez_id: 11819, Experiment: 73606594, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Prlr ISH: Mus musculus, Male, P56, coronal

Prlr, Experiment: 1268, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ros1 ISH: Mus musculus, Male, P56, sagittal

Ros1 proto-oncogene, entrez_id: 19886, Experiment: 69818281, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Loxl2 ISH: Mus musculus, Male, P56, coronal

lysyl oxidase-like 2, entrez_id: 94352, Experiment: 71670486, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cdh20 ISH: Mus musculus, Male, P56, sagittal

cadherin 20, entrez_id: 23836, Experiment: 77464878, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tsc22d4 ISH: Mus musculus, Male, P56, sagittal

Tsc22d4, Experiment: 74581363, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Col6a1 ISH: Mus musculus, Male, P56, coronal

Col6a1, Experiment: 290, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nhlh1 ISH: Mus musculus, Male, P56, sagittal

nescient helix loop helix 1, entrez_id: 18071, Experiment: 71656703, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Sstr4 ISH: Mus musculus, Male, P56, coronal

somatostatin receptor 4, entrez_id: 20608, Experiment: 73636037, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)