Allen Brain Atlas

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Myb ISH: Mus musculus, Male, P56, sagittal Myb, Experiment: 1513, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Atxn1 ISH: Mus musculus, Male, P56, sagittal Atxn1, Experiment: 933, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Scx ISH: Mus musculus, Male, P56, sagittal scleraxis, entrez_id: 20289, Experiment: 74635719, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dcn ISH: Mus musculus, Male, P56, sagittal Dcn, Experiment: 330, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Otx1 ISH: Mus musculus, Male, P56, coronal Otx1, Experiment: 762, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Pde10a ISH: Mus musculus, Male, P56, coronal phosphodiesterase 10A, entrez_id: 23984, Experiment: 71924204, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Isl2 ISH: Mus musculus, Male, P56, sagittal insulin related protein 2 (islet 2), entrez_id: 104360, Experiment: 69289237, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tfap2c ISH: Mus musculus, Male, P56, coronal "transcription factor AP-2, gamma", entrez_id: 21420, Experiment: 74047843, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pclo ISH: Mus musculus, Male, P56, coronal piccolo (presynaptic cytomatrix protein), entrez_id: 26875, Experiment: 71670682, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Hoxd8 ISH: Mus musculus, Male, P56, sagittal homeobox D8, entrez_id: 15437, Experiment: 71393406, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Sema6a ISH: Mus musculus, Male, P56, coronal "sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A", entrez_id: 20358, Experiment: 71358651, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Efnb3 ISH: Mus musculus, Male, P56, coronal Efnb3, Experiment: 387, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Slc1a4 ISH: Mus musculus, Male, P56, sagittal "solute carrier family 1 (glutamate/neutral amino acid transporter), member 4", entrez_id: 55963, Experiment: 68920797, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Glrb ISH: Mus musculus, Male, P56, coronal Glrb, Experiment: 498, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gpr88 ISH: Mus musculus, Male, P56, coronal G-protein coupled receptor 88, entrez_id: 64378, Experiment: 79567811, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nes ISH: Mus musculus, Male, P56, coronal Nes, Experiment: 1387, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Sema3d ISH: Mus musculus, Male, P56, sagittal "sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D", entrez_id: 108151, Experiment: 71152312, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Nkx6-1 ISH: Mus musculus, Male, P56, sagittal NK6 homeobox 1, entrez_id: 18096, Experiment: 81657661, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nhlh1 ISH: Mus musculus, Male, P56, sagittal nescient helix loop helix 1, entrez_id: 18071, Experiment: 75694237, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cd44 ISH: Mus musculus, Male, P56, sagittal CD44 antigen, entrez_id: 12505, Experiment: 79632244, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Myb ISH: Mus musculus, Male, P56, sagittal

Myb, Experiment: 1513, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Atxn1 ISH: Mus musculus, Male, P56, sagittal

Atxn1, Experiment: 933, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Scx ISH: Mus musculus, Male, P56, sagittal

scleraxis, entrez_id: 20289, Experiment: 74635719, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dcn ISH: Mus musculus, Male, P56, sagittal

Dcn, Experiment: 330, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Otx1 ISH: Mus musculus, Male, P56, coronal

Otx1, Experiment: 762, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Pde10a ISH: Mus musculus, Male, P56, coronal

phosphodiesterase 10A, entrez_id: 23984, Experiment: 71924204, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Isl2 ISH: Mus musculus, Male, P56, sagittal

insulin related protein 2 (islet 2), entrez_id: 104360, Experiment: 69289237, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tfap2c ISH: Mus musculus, Male, P56, coronal

"transcription factor AP-2, gamma", entrez_id: 21420, Experiment: 74047843, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pclo ISH: Mus musculus, Male, P56, coronal

piccolo (presynaptic cytomatrix protein), entrez_id: 26875, Experiment: 71670682, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Hoxd8 ISH: Mus musculus, Male, P56, sagittal

homeobox D8, entrez_id: 15437, Experiment: 71393406, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Sema6a ISH: Mus musculus, Male, P56, coronal

"sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A", entrez_id: 20358, Experiment: 71358651, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Efnb3 ISH: Mus musculus, Male, P56, coronal

Efnb3, Experiment: 387, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Slc1a4 ISH: Mus musculus, Male, P56, sagittal

"solute carrier family 1 (glutamate/neutral amino acid transporter), member 4", entrez_id: 55963, Experiment: 68920797, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Glrb ISH: Mus musculus, Male, P56, coronal

Glrb, Experiment: 498, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gpr88 ISH: Mus musculus, Male, P56, coronal

G-protein coupled receptor 88, entrez_id: 64378, Experiment: 79567811, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nes ISH: Mus musculus, Male, P56, coronal

Nes, Experiment: 1387, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Sema3d ISH: Mus musculus, Male, P56, sagittal

"sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D", entrez_id: 108151, Experiment: 71152312, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Nkx6-1 ISH: Mus musculus, Male, P56, sagittal

NK6 homeobox 1, entrez_id: 18096, Experiment: 81657661, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nhlh1 ISH: Mus musculus, Male, P56, sagittal

nescient helix loop helix 1, entrez_id: 18071, Experiment: 75694237, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cd44 ISH: Mus musculus, Male, P56, sagittal

CD44 antigen, entrez_id: 12505, Experiment: 79632244, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)