Allen Brain Atlas

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Fos ISH: Mus musculus, Male, P56, sagittal Fos, Experiment: 459, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cdh6 ISH: Mus musculus, Male, P56, coronal Cdh6, Experiment: 238, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Sostdc1 ISH: Mus musculus, Male, P56, sagittal sclerostin domain containing 1, entrez_id: 66042, Experiment: 77925697, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Npas3 ISH: Mus musculus, Male, P56, sagittal Npas3, Experiment: 73949578, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Chst2 ISH: Mus musculus, Male, P56, coronal Chst2, Experiment: 266, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Oprk1 ISH: Mus musculus, Male, P56, sagittal Oprk1, Experiment: 100145378, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Elf2 ISH: Mus musculus, Male, P56, coronal Elf2, Experiment: 1349, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Itgb1 ISH: Mus musculus, Male, P56, sagittal Itgb1, Experiment: 73512518, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Sema4f ISH: Mus musculus, Male, P56, sagittal "sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain", entrez_id: 20355, Experiment: 79544850, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Akt1s1 ISH: Mus musculus, Male, P56, sagittal AKT1 substrate 1 (proline-rich), entrez_id: 67605, Experiment: 71380556, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Slc16a2 ISH: Mus musculus, Male, P56, coronal "solute carrier family 16 (monocarboxylic acid transporters), member 2", entrez_id: 20502, Experiment: 73929597, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Lypd1 ISH: Mus musculus, Male, P56, sagittal Ly6/Plaur domain containing 1, entrez_id: 72585, Experiment: 70430708, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Hes6 ISH: Mus musculus, Male, P56, coronal Hes6, Experiment: 1504, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Hcn1 ISH: Mus musculus, Male, P56, coronal "hyperpolarization-activated, cyclic nucleotide-gated K+ 1", entrez_id: 15165, Experiment: 77280561, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dlx3 ISH: Mus musculus, Male, P56, sagittal Dlx3, Experiment: 351, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Chrm4 ISH: Mus musculus, Male, P56, sagittal Chrm4, Experiment: 262, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Srd5a1 ISH: Mus musculus, Male, P56, sagittal steroid 5 alpha-reductase 1, entrez_id: 78925, Experiment: 69885732, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Neurod1 ISH: Mus musculus, Male, P56, sagittal neurogenic differentiation 1, entrez_id: 18012, Experiment: 47984, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Gdf5 ISH: Mus musculus, Male, P56, sagittal growth differentiation factor 5, entrez_id: 14563, Experiment: 75214943, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Ank3 ISH: Mus musculus, Male, P56, sagittal "ankyrin 3, epithelial", entrez_id: 11735, Experiment: 70795823, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Fos ISH: Mus musculus, Male, P56, sagittal

Fos, Experiment: 459, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cdh6 ISH: Mus musculus, Male, P56, coronal

Cdh6, Experiment: 238, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Sostdc1 ISH: Mus musculus, Male, P56, sagittal

sclerostin domain containing 1, entrez_id: 66042, Experiment: 77925697, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Npas3 ISH: Mus musculus, Male, P56, sagittal

Npas3, Experiment: 73949578, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Chst2 ISH: Mus musculus, Male, P56, coronal

Chst2, Experiment: 266, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Oprk1 ISH: Mus musculus, Male, P56, sagittal

Oprk1, Experiment: 100145378, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Elf2 ISH: Mus musculus, Male, P56, coronal

Elf2, Experiment: 1349, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Itgb1 ISH: Mus musculus, Male, P56, sagittal

Itgb1, Experiment: 73512518, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Sema4f ISH: Mus musculus, Male, P56, sagittal

"sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain", entrez_id: 20355, Experiment: 79544850, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Akt1s1 ISH: Mus musculus, Male, P56, sagittal

AKT1 substrate 1 (proline-rich), entrez_id: 67605, Experiment: 71380556, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Slc16a2 ISH: Mus musculus, Male, P56, coronal

"solute carrier family 16 (monocarboxylic acid transporters), member 2", entrez_id: 20502, Experiment: 73929597, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Lypd1 ISH: Mus musculus, Male, P56, sagittal

Ly6/Plaur domain containing 1, entrez_id: 72585, Experiment: 70430708, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Hes6 ISH: Mus musculus, Male, P56, coronal

Hes6, Experiment: 1504, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Hcn1 ISH: Mus musculus, Male, P56, coronal

"hyperpolarization-activated, cyclic nucleotide-gated K+ 1", entrez_id: 15165, Experiment: 77280561, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dlx3 ISH: Mus musculus, Male, P56, sagittal

Dlx3, Experiment: 351, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Chrm4 ISH: Mus musculus, Male, P56, sagittal

Chrm4, Experiment: 262, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Srd5a1 ISH: Mus musculus, Male, P56, sagittal

steroid 5 alpha-reductase 1, entrez_id: 78925, Experiment: 69885732, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Neurod1 ISH: Mus musculus, Male, P56, sagittal

neurogenic differentiation 1, entrez_id: 18012, Experiment: 47984, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Gdf5 ISH: Mus musculus, Male, P56, sagittal

growth differentiation factor 5, entrez_id: 14563, Experiment: 75214943, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Ank3 ISH: Mus musculus, Male, P56, sagittal

"ankyrin 3, epithelial", entrez_id: 11735, Experiment: 70795823, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)