Allen Brain Atlas

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Notch3 ISH: Mus musculus, Male, P56, coronal Notch3, Experiment: 1559, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Pcdh11x ISH: Mus musculus, Male, P56, sagittal protocadherin 11 X-linked, entrez_id: 245578, Experiment: 69782772, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ube3a ISH: Mus musculus, Male, P56, coronal ubiquitin protein ligase E3A, entrez_id: 22215, Experiment: 79591689, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tfe3 ISH: Mus musculus, Male, P56, sagittal transcription factor E3, entrez_id: 209446, Experiment: 69290639, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Mycl ISH: Mus musculus, Male, P56, coronal "v-myc myelocytomatosis viral oncogene homolog, lung carcinoma derived (avian)", entrez_id: 16918, Experiment: 74881158, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gap43 ISH: Mus musculus, Male, P56, coronal growth associated protein 43, entrez_id: 14432, Experiment: 70928270, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Zfp189 ISH: Mus musculus, Male, P56, coronal zinc finger protein 189, entrez_id: 230162, Experiment: 199388, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Tbr1 ISH: Mus musculus, Male, P56, coronal Tbr1, Experiment: 1041, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tsc2 ISH: Mus musculus, Male, P56, coronal Tsc2, Experiment: 1431, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nkx2-3 ISH: Mus musculus, Male, P56, sagittal NK2 homeobox 3, entrez_id: 18089, Experiment: 81654157, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Phb2 ISH: Mus musculus, Male, P56, sagittal prohibitin 2, entrez_id: 12034, Experiment: 69529250, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Grik3 ISH: Mus musculus, Male, P56, coronal "glutamate receptor, ionotropic, kainate 3", entrez_id: 14807, Experiment: 75749418, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Plxnc1 ISH: Mus musculus, Male, P56, sagittal Plxnc1, Experiment: 821, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pomc ISH: Mus musculus, Male, P56, coronal pro-opiomelanocortin-alpha, entrez_id: 18976, Experiment: 80517122, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Pde5a ISH: Mus musculus, Male, P56, sagittal "phosphodiesterase 5A, cGMP-specific", entrez_id: 242202, Experiment: 70300714, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nrg1 ISH: Mus musculus, Male, P56, coronal neuregulin 1, entrez_id: 211323, Experiment: 74743257, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Zfpm2 ISH: Mus musculus, Male, P56, coronal "zinc finger protein, multitype 2", entrez_id: 22762, Experiment: 71358673, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cebpa ISH: Mus musculus, Male, P56, coronal Cebpa, Experiment: 2087, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Hbb-b2 ISH: Mus musculus, Male, P56, sagittal "hemoglobin, beta adult minor chain", entrez_id: 15130, Experiment: 68545324, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pnoc ISH: Mus musculus, Male, P56, sagittal prepronociceptin, entrez_id: 18155, Experiment: 73679032, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Notch3 ISH: Mus musculus, Male, P56, coronal

Notch3, Experiment: 1559, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Pcdh11x ISH: Mus musculus, Male, P56, sagittal

protocadherin 11 X-linked, entrez_id: 245578, Experiment: 69782772, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ube3a ISH: Mus musculus, Male, P56, coronal

ubiquitin protein ligase E3A, entrez_id: 22215, Experiment: 79591689, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tfe3 ISH: Mus musculus, Male, P56, sagittal

transcription factor E3, entrez_id: 209446, Experiment: 69290639, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Mycl ISH: Mus musculus, Male, P56, coronal

"v-myc myelocytomatosis viral oncogene homolog, lung carcinoma derived (avian)", entrez_id: 16918, Experiment: 74881158, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gap43 ISH: Mus musculus, Male, P56, coronal

growth associated protein 43, entrez_id: 14432, Experiment: 70928270, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Zfp189 ISH: Mus musculus, Male, P56, coronal

zinc finger protein 189, entrez_id: 230162, Experiment: 199388, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Tbr1 ISH: Mus musculus, Male, P56, coronal

Tbr1, Experiment: 1041, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tsc2 ISH: Mus musculus, Male, P56, coronal

Tsc2, Experiment: 1431, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nkx2-3 ISH: Mus musculus, Male, P56, sagittal

NK2 homeobox 3, entrez_id: 18089, Experiment: 81654157, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Phb2 ISH: Mus musculus, Male, P56, sagittal

prohibitin 2, entrez_id: 12034, Experiment: 69529250, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Grik3 ISH: Mus musculus, Male, P56, coronal

"glutamate receptor, ionotropic, kainate 3", entrez_id: 14807, Experiment: 75749418, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Plxnc1 ISH: Mus musculus, Male, P56, sagittal

Plxnc1, Experiment: 821, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pomc ISH: Mus musculus, Male, P56, coronal

pro-opiomelanocortin-alpha, entrez_id: 18976, Experiment: 80517122, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Pde5a ISH: Mus musculus, Male, P56, sagittal

"phosphodiesterase 5A, cGMP-specific", entrez_id: 242202, Experiment: 70300714, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nrg1 ISH: Mus musculus, Male, P56, coronal

neuregulin 1, entrez_id: 211323, Experiment: 74743257, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Zfpm2 ISH: Mus musculus, Male, P56, coronal

"zinc finger protein, multitype 2", entrez_id: 22762, Experiment: 71358673, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cebpa ISH: Mus musculus, Male, P56, coronal

Cebpa, Experiment: 2087, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Hbb-b2 ISH: Mus musculus, Male, P56, sagittal

"hemoglobin, beta adult minor chain", entrez_id: 15130, Experiment: 68545324, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pnoc ISH: Mus musculus, Male, P56, sagittal

prepronociceptin, entrez_id: 18155, Experiment: 73679032, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)