Allen Brain Atlas

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Mixl1 ISH: Mus musculus, Male, P56, sagittal Mix1 homeobox-like 1 (Xenopus laevis), entrez_id: 27217, Experiment: 81657685, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ssrp1 ISH: Mus musculus, Male, P56, sagittal structure specific recognition protein 1, entrez_id: 20833, Experiment: 69838048, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Fndc3a ISH: Mus musculus, Male, P56, sagittal fibronectin type III domain containing 3A, entrez_id: 319448, Experiment: 69672551, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Adam17 ISH: Mus musculus, Male, P56, sagittal a disintegrin and metallopeptidase domain 17, entrez_id: 11491, Experiment: 75988237, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Spdef ISH: Mus musculus, Male, P56, coronal Spdef, Experiment: 2627, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Ferd3l ISH: Mus musculus, Male, P56, sagittal Fer3-like (Drosophila), entrez_id: 114712, Experiment: 81657659, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pbx3 ISH: Mus musculus, Male, P56, sagittal pre B cell leukemia homeobox 3, entrez_id: 18516, Experiment: 71669002, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Wif1 ISH: Mus musculus, Male, P56, coronal Wnt inhibitory factor 1, entrez_id: 24117, Experiment: 74511885, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Sox2 ISH: Mus musculus, Male, P56, sagittal SRY (sex determining region Y)-box 2, entrez_id: 20674, Experiment: 71656827, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Rest ISH: Mus musculus, Male, P56, sagittal RE1-silencing transcription factor, entrez_id: 19712, Experiment: 80342048, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dlg4 ISH: Mus musculus, Male, P56, sagittal "discs, large homolog 4 (Drosophila)", entrez_id: 13385, Experiment: 72182975, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Sorbs1 ISH: Mus musculus, Male, P56, sagittal sorbin and SH3 domain containing 1, entrez_id: 20411, Experiment: 69169391, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Fos ISH: Mus musculus, Male, P56, sagittal FBJ osteosarcoma oncogene, entrez_id: 14281, Experiment: 68442895, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Bcar1 ISH: Mus musculus, Male, P56, sagittal breast cancer anti-estrogen resistance 1, entrez_id: 12927, Experiment: 71656769, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cic ISH: Mus musculus, Male, P56, sagittal capicua homolog (Drosophila), entrez_id: 71722, Experiment: 71307244, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Atp8a1 ISH: Mus musculus, Male, P56, sagittal "ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1", entrez_id: 11980, Experiment: 69526994, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Mfge8 ISH: Mus musculus, Male, P56, sagittal milk fat globule-EGF factor 8 protein, entrez_id: 17304, Experiment: 71763474, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Creb3l2 ISH: Mus musculus, Male, P56, sagittal cAMP responsive element binding protein 3-like 2, entrez_id: 208647, Experiment: 68920431, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Npy1r ISH: Mus musculus, Male, P56, coronal neuropeptide Y receptor Y1, entrez_id: 18166, Experiment: 72103807, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pcdh10 ISH: Mus musculus, Male, P56, sagittal protocadherin 10, entrez_id: 18526, Experiment: 71668995, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Mixl1 ISH: Mus musculus, Male, P56, sagittal

Mix1 homeobox-like 1 (Xenopus laevis), entrez_id: 27217, Experiment: 81657685, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ssrp1 ISH: Mus musculus, Male, P56, sagittal

structure specific recognition protein 1, entrez_id: 20833, Experiment: 69838048, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Fndc3a ISH: Mus musculus, Male, P56, sagittal

fibronectin type III domain containing 3A, entrez_id: 319448, Experiment: 69672551, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Adam17 ISH: Mus musculus, Male, P56, sagittal

a disintegrin and metallopeptidase domain 17, entrez_id: 11491, Experiment: 75988237, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Spdef ISH: Mus musculus, Male, P56, coronal

Spdef, Experiment: 2627, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Ferd3l ISH: Mus musculus, Male, P56, sagittal

Fer3-like (Drosophila), entrez_id: 114712, Experiment: 81657659, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pbx3 ISH: Mus musculus, Male, P56, sagittal

pre B cell leukemia homeobox 3, entrez_id: 18516, Experiment: 71669002, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Wif1 ISH: Mus musculus, Male, P56, coronal

Wnt inhibitory factor 1, entrez_id: 24117, Experiment: 74511885, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Sox2 ISH: Mus musculus, Male, P56, sagittal

SRY (sex determining region Y)-box 2, entrez_id: 20674, Experiment: 71656827, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Rest ISH: Mus musculus, Male, P56, sagittal

RE1-silencing transcription factor, entrez_id: 19712, Experiment: 80342048, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dlg4 ISH: Mus musculus, Male, P56, sagittal

"discs, large homolog 4 (Drosophila)", entrez_id: 13385, Experiment: 72182975, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Sorbs1 ISH: Mus musculus, Male, P56, sagittal

sorbin and SH3 domain containing 1, entrez_id: 20411, Experiment: 69169391, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Fos ISH: Mus musculus, Male, P56, sagittal

FBJ osteosarcoma oncogene, entrez_id: 14281, Experiment: 68442895, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Bcar1 ISH: Mus musculus, Male, P56, sagittal

breast cancer anti-estrogen resistance 1, entrez_id: 12927, Experiment: 71656769, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cic ISH: Mus musculus, Male, P56, sagittal

capicua homolog (Drosophila), entrez_id: 71722, Experiment: 71307244, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Atp8a1 ISH: Mus musculus, Male, P56, sagittal

"ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1", entrez_id: 11980, Experiment: 69526994, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Mfge8 ISH: Mus musculus, Male, P56, sagittal

milk fat globule-EGF factor 8 protein, entrez_id: 17304, Experiment: 71763474, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Creb3l2 ISH: Mus musculus, Male, P56, sagittal

cAMP responsive element binding protein 3-like 2, entrez_id: 208647, Experiment: 68920431, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Npy1r ISH: Mus musculus, Male, P56, coronal

neuropeptide Y receptor Y1, entrez_id: 18166, Experiment: 72103807, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pcdh10 ISH: Mus musculus, Male, P56, sagittal

protocadherin 10, entrez_id: 18526, Experiment: 71668995, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)