Allen Brain Atlas

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Cdx2 ISH: Mus musculus, Male, P56, sagittal caudal type homeobox 2, entrez_id: 12591, Experiment: 69288842, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Fgf15 ISH: Mus musculus, Male, P56, sagittal Fgf15, Experiment: 1716, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Insl6 ISH: Mus musculus, Male, P56, sagittal insulin-like 6, entrez_id: 27356, Experiment: 69549175, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gdf10 ISH: Mus musculus, Male, P56, sagittal growth differentiation factor 10, entrez_id: 14560, Experiment: 71587709, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Npsr1 ISH: Mus musculus, Male, P56, coronal neuropeptide S receptor 1, entrez_id: 319239, Experiment: 70560288, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Sema5b ISH: Mus musculus, Male, P56, sagittal Sema5b, Experiment: 954, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nr2f6 ISH: Mus musculus, Male, P56, sagittal Nr2f6, Experiment: 2437, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Trip13 ISH: Mus musculus, Male, P56, sagittal thyroid hormone receptor interactor 13, entrez_id: 69716, Experiment: 71488870, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Mnx1 ISH: Mus musculus, Male, P56, sagittal Mnx1, Experiment: 100145354, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tsc22d4 ISH: Mus musculus, Male, P56, sagittal "TSC22 domain family, member 4", entrez_id: 78829, Experiment: 71148040, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dcn ISH: Mus musculus, Male, P56, sagittal decorin, entrez_id: 13179, Experiment: 79761045, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Scpep1 ISH: Mus musculus, Male, P56, sagittal serine carboxypeptidase 1, entrez_id: 74617, Experiment: 67979030, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Meox1 ISH: Mus musculus, Male, P56, sagittal Meox1, Experiment: 86372, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gdf3 ISH: Mus musculus, Male, P56, sagittal growth differentiation factor 3, entrez_id: 14562, Experiment: 69672844, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Rln3 ISH: Mus musculus, Male, P56, sagittal relaxin 3, entrez_id: 212108, Experiment: 81600590, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Baiap3 ISH: Mus musculus, Male, P56, sagittal BAI1-associated protein 3, entrez_id: 545192, Experiment: 70795349, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Foxa1 ISH: Mus musculus, Male, P56, coronal forkhead box A1, entrez_id: 15375, Experiment: 77869794, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Wnt2 ISH: Mus musculus, Male, P56, sagittal "wingless-type MMTV integration site family, member 2", entrez_id: 22413, Experiment: 130522, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Sncg ISH: Mus musculus, Male, P56, sagittal "synuclein, gamma", entrez_id: 20618, Experiment: 68545693, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Thrb ISH: Mus musculus, Male, P56, sagittal thyroid hormone receptor beta, entrez_id: 21834, Experiment: 69290674, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Cdx2 ISH: Mus musculus, Male, P56, sagittal

caudal type homeobox 2, entrez_id: 12591, Experiment: 69288842, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Fgf15 ISH: Mus musculus, Male, P56, sagittal

Fgf15, Experiment: 1716, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Insl6 ISH: Mus musculus, Male, P56, sagittal

insulin-like 6, entrez_id: 27356, Experiment: 69549175, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gdf10 ISH: Mus musculus, Male, P56, sagittal

growth differentiation factor 10, entrez_id: 14560, Experiment: 71587709, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Npsr1 ISH: Mus musculus, Male, P56, coronal

neuropeptide S receptor 1, entrez_id: 319239, Experiment: 70560288, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Sema5b ISH: Mus musculus, Male, P56, sagittal

Sema5b, Experiment: 954, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nr2f6 ISH: Mus musculus, Male, P56, sagittal

Nr2f6, Experiment: 2437, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Trip13 ISH: Mus musculus, Male, P56, sagittal

thyroid hormone receptor interactor 13, entrez_id: 69716, Experiment: 71488870, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Mnx1 ISH: Mus musculus, Male, P56, sagittal

Mnx1, Experiment: 100145354, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tsc22d4 ISH: Mus musculus, Male, P56, sagittal

"TSC22 domain family, member 4", entrez_id: 78829, Experiment: 71148040, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dcn ISH: Mus musculus, Male, P56, sagittal

decorin, entrez_id: 13179, Experiment: 79761045, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Scpep1 ISH: Mus musculus, Male, P56, sagittal

serine carboxypeptidase 1, entrez_id: 74617, Experiment: 67979030, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Meox1 ISH: Mus musculus, Male, P56, sagittal

Meox1, Experiment: 86372, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gdf3 ISH: Mus musculus, Male, P56, sagittal

growth differentiation factor 3, entrez_id: 14562, Experiment: 69672844, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Rln3 ISH: Mus musculus, Male, P56, sagittal

relaxin 3, entrez_id: 212108, Experiment: 81600590, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Baiap3 ISH: Mus musculus, Male, P56, sagittal

BAI1-associated protein 3, entrez_id: 545192, Experiment: 70795349, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Foxa1 ISH: Mus musculus, Male, P56, coronal

forkhead box A1, entrez_id: 15375, Experiment: 77869794, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Wnt2 ISH: Mus musculus, Male, P56, sagittal

"wingless-type MMTV integration site family, member 2", entrez_id: 22413, Experiment: 130522, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Sncg ISH: Mus musculus, Male, P56, sagittal

"synuclein, gamma", entrez_id: 20618, Experiment: 68545693, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Thrb ISH: Mus musculus, Male, P56, sagittal

thyroid hormone receptor beta, entrez_id: 21834, Experiment: 69290674, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)