Allen Brain Atlas

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Agrp ISH: Mus musculus, Male, P56, sagittal agouti related protein, entrez_id: 11604, Experiment: 69524455, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nr2f1 ISH: Mus musculus, Male, P56, coronal Nr2f1, Experiment: 720, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Prodh ISH: Mus musculus, Male, P56, sagittal proline dehydrogenase, entrez_id: 19125, Experiment: 75197522, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Hoxa4 ISH: Mus musculus, Male, P56, sagittal homeobox A4, entrez_id: 15401, Experiment: 70920087, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Lmo4 ISH: Mus musculus, Male, P56, sagittal Lmo4, Experiment: 2386, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tac2 ISH: Mus musculus, Male, P56, coronal tachykinin 2, entrez_id: 21334, Experiment: 79488911, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Col4a5 ISH: Mus musculus, Male, P56, coronal "collagen, type IV, alpha 5", entrez_id: 12830, Experiment: 73992932, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Plxna4 ISH: Mus musculus, Male, P56, coronal plexin A4, entrez_id: 243743, Experiment: 75084090, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Park2 ISH: Mus musculus, Male, P56, sagittal "Parkinson disease (autosomal recessive, juvenile) 2, parkin", entrez_id: 50873, Experiment: 77932773, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Adcyap1 ISH: Mus musculus, Male, P56, coronal adenylate cyclase activating polypeptide 1, entrez_id: 11516, Experiment: 74511882, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ndnf ISH: Mus musculus, Male, P56, sagittal neuron-derived neurotrophic factor, entrez_id: 68169, Experiment: 68924811, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Wnt10a ISH: Mus musculus, Male, P56, sagittal Wnt10a, Experiment: 2724, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Ntf5 ISH: Mus musculus, Male, P56, coronal Ntf5, Experiment: 1393, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Sfrp2 ISH: Mus musculus, Male, P56, coronal Sfrp2, Experiment: 1280, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Rax ISH: Mus musculus, Male, P56, sagittal Rax, Experiment: 1821, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pde1a ISH: Mus musculus, Male, P56, sagittal Pde1a, Experiment: 783, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Plch1 ISH: Mus musculus, Male, P56, coronal "phospholipase C, eta 1", entrez_id: 269437, Experiment: 71717604, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Col6a1 ISH: Mus musculus, Male, P56, coronal "collagen, type VI, alpha 1", entrez_id: 12833, Experiment: 77869097, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gli3 ISH: Mus musculus, Male, P56, sagittal Gli3, Experiment: 1616, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Col16a1 ISH: Mus musculus, Male, P56, coronal "collagen, type XVI, alpha 1", entrez_id: 107581, Experiment: 74273122, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Agrp ISH: Mus musculus, Male, P56, sagittal

agouti related protein, entrez_id: 11604, Experiment: 69524455, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nr2f1 ISH: Mus musculus, Male, P56, coronal

Nr2f1, Experiment: 720, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Prodh ISH: Mus musculus, Male, P56, sagittal

proline dehydrogenase, entrez_id: 19125, Experiment: 75197522, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Hoxa4 ISH: Mus musculus, Male, P56, sagittal

homeobox A4, entrez_id: 15401, Experiment: 70920087, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Lmo4 ISH: Mus musculus, Male, P56, sagittal

Lmo4, Experiment: 2386, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tac2 ISH: Mus musculus, Male, P56, coronal

tachykinin 2, entrez_id: 21334, Experiment: 79488911, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Col4a5 ISH: Mus musculus, Male, P56, coronal

"collagen, type IV, alpha 5", entrez_id: 12830, Experiment: 73992932, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Plxna4 ISH: Mus musculus, Male, P56, coronal

plexin A4, entrez_id: 243743, Experiment: 75084090, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Park2 ISH: Mus musculus, Male, P56, sagittal

"Parkinson disease (autosomal recessive, juvenile) 2, parkin", entrez_id: 50873, Experiment: 77932773, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Adcyap1 ISH: Mus musculus, Male, P56, coronal

adenylate cyclase activating polypeptide 1, entrez_id: 11516, Experiment: 74511882, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ndnf ISH: Mus musculus, Male, P56, sagittal

neuron-derived neurotrophic factor, entrez_id: 68169, Experiment: 68924811, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Wnt10a ISH: Mus musculus, Male, P56, sagittal

Wnt10a, Experiment: 2724, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Ntf5 ISH: Mus musculus, Male, P56, coronal

Ntf5, Experiment: 1393, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Sfrp2 ISH: Mus musculus, Male, P56, coronal

Sfrp2, Experiment: 1280, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Rax ISH: Mus musculus, Male, P56, sagittal

Rax, Experiment: 1821, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pde1a ISH: Mus musculus, Male, P56, sagittal

Pde1a, Experiment: 783, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Plch1 ISH: Mus musculus, Male, P56, coronal

"phospholipase C, eta 1", entrez_id: 269437, Experiment: 71717604, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Col6a1 ISH: Mus musculus, Male, P56, coronal

"collagen, type VI, alpha 1", entrez_id: 12833, Experiment: 77869097, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gli3 ISH: Mus musculus, Male, P56, sagittal

Gli3, Experiment: 1616, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Col16a1 ISH: Mus musculus, Male, P56, coronal

"collagen, type XVI, alpha 1", entrez_id: 107581, Experiment: 74273122, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)