Allen Brain Atlas

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Nr1d1 ISH: Mus musculus, Male, P56, sagittal Nr1d1, Experiment: 1244, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Meis1 ISH: Mus musculus, Male, P56, coronal Meis homeobox 1, entrez_id: 17268, Experiment: 74047866, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pnoc ISH: Mus musculus, Male, P56, coronal prepronociceptin, entrez_id: 18155, Experiment: 75038402, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nov ISH: Mus musculus, Male, P56, sagittal nephroblastoma overexpressed gene, entrez_id: 18133, Experiment: 75457465, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pcdh1 ISH: Mus musculus, Male, P56, coronal protocadherin 1, entrez_id: 75599, Experiment: 75934527, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Anxa11 ISH: Mus musculus, Male, P56, coronal Anxa11, Experiment: 2029, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Hoxb13 ISH: Mus musculus, Male, P56, sagittal Hoxb13, Experiment: 2300, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Crlf1 ISH: Mus musculus, Male, P56, sagittal cytokine receptor-like factor 1, entrez_id: 12931, Experiment: 69608064, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Zbtb20 ISH: Mus musculus, Male, P56, coronal zinc finger and BTB domain containing 20, entrez_id: 56490, Experiment: 79568020, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Npy1r ISH: Mus musculus, Male, P56, sagittal neuropeptide Y receptor Y1, entrez_id: 18166, Experiment: 69013393, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Lpl ISH: Mus musculus, Male, P56, sagittal lipoprotein lipase, entrez_id: 16956, Experiment: 79750675, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Vasp ISH: Mus musculus, Male, P56, sagittal vasodilator-stimulated phosphoprotein, entrez_id: 22323, Experiment: 634445, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Trpc5 ISH: Mus musculus, Male, P56, sagittal "transient receptor potential cation channel, subfamily C, member 5", entrez_id: 22067, Experiment: 69288399, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dsc3 ISH: Mus musculus, Male, P56, sagittal desmocollin 3, entrez_id: 13507, Experiment: 81655564, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Sorbs1 ISH: Mus musculus, Male, P56, coronal sorbin and SH3 domain containing 1, entrez_id: 20411, Experiment: 74425572, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Rora ISH: Mus musculus, Male, P56, coronal RAR-related orphan receptor alpha, entrez_id: 19883, Experiment: 77371865, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Doc2b ISH: Mus musculus, Male, P56, coronal "double C2, beta", entrez_id: 13447, Experiment: 72283810, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Igf2 ISH: Mus musculus, Male, P56, sagittal Igf2, Experiment: 2314, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pyy ISH: Mus musculus, Male, P56, sagittal peptide YY, entrez_id: 217212, Experiment: 130541, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Chat ISH: Mus musculus, Male, P56, coronal Chat, Experiment: 252, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Nr1d1 ISH: Mus musculus, Male, P56, sagittal

Nr1d1, Experiment: 1244, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Meis1 ISH: Mus musculus, Male, P56, coronal

Meis homeobox 1, entrez_id: 17268, Experiment: 74047866, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pnoc ISH: Mus musculus, Male, P56, coronal

prepronociceptin, entrez_id: 18155, Experiment: 75038402, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nov ISH: Mus musculus, Male, P56, sagittal

nephroblastoma overexpressed gene, entrez_id: 18133, Experiment: 75457465, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pcdh1 ISH: Mus musculus, Male, P56, coronal

protocadherin 1, entrez_id: 75599, Experiment: 75934527, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Anxa11 ISH: Mus musculus, Male, P56, coronal

Anxa11, Experiment: 2029, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Hoxb13 ISH: Mus musculus, Male, P56, sagittal

Hoxb13, Experiment: 2300, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Crlf1 ISH: Mus musculus, Male, P56, sagittal

cytokine receptor-like factor 1, entrez_id: 12931, Experiment: 69608064, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Zbtb20 ISH: Mus musculus, Male, P56, coronal

zinc finger and BTB domain containing 20, entrez_id: 56490, Experiment: 79568020, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Npy1r ISH: Mus musculus, Male, P56, sagittal

neuropeptide Y receptor Y1, entrez_id: 18166, Experiment: 69013393, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Lpl ISH: Mus musculus, Male, P56, sagittal

lipoprotein lipase, entrez_id: 16956, Experiment: 79750675, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Vasp ISH: Mus musculus, Male, P56, sagittal

vasodilator-stimulated phosphoprotein, entrez_id: 22323, Experiment: 634445, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Trpc5 ISH: Mus musculus, Male, P56, sagittal

"transient receptor potential cation channel, subfamily C, member 5", entrez_id: 22067, Experiment: 69288399, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dsc3 ISH: Mus musculus, Male, P56, sagittal

desmocollin 3, entrez_id: 13507, Experiment: 81655564, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Sorbs1 ISH: Mus musculus, Male, P56, coronal

sorbin and SH3 domain containing 1, entrez_id: 20411, Experiment: 74425572, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Rora ISH: Mus musculus, Male, P56, coronal

RAR-related orphan receptor alpha, entrez_id: 19883, Experiment: 77371865, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Doc2b ISH: Mus musculus, Male, P56, coronal

"double C2, beta", entrez_id: 13447, Experiment: 72283810, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Igf2 ISH: Mus musculus, Male, P56, sagittal

Igf2, Experiment: 2314, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pyy ISH: Mus musculus, Male, P56, sagittal

peptide YY, entrez_id: 217212, Experiment: 130541, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Chat ISH: Mus musculus, Male, P56, coronal

Chat, Experiment: 252, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)