Allen Brain Atlas

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Irx3 ISH: Mus musculus, Male, P56, sagittal Iroquois related homeobox 3, entrez_id: 16373, Experiment: 81654099, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cck ISH: Mus musculus, Male, P56, coronal cholecystokinin, entrez_id: 12424, Experiment: 77869074, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nog ISH: Mus musculus, Male, P56, coronal noggin, entrez_id: 18121, Experiment: 75084476, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Fmo1 ISH: Mus musculus, Male, P56, coronal flavin containing monooxygenase 1, entrez_id: 14261, Experiment: 72008121, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gad1 ISH: Mus musculus, Male, P56, coronal glutamate decarboxylase 1, entrez_id: 14415, Experiment: 69120554, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Mta3 ISH: Mus musculus, Male, P56, sagittal metastasis associated 3, entrez_id: 116871, Experiment: 130537, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Fzd2 ISH: Mus musculus, Male, P56, sagittal frizzled homolog 2 (Drosophila), entrez_id: 57265, Experiment: 81654103, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gtf3c2 ISH: Mus musculus, Male, P56, sagittal Gtf3c2, Experiment: 8, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Psenen ISH: Mus musculus, Male, P56, sagittal presenilin enhancer 2 homolog (C. elegans), entrez_id: 66340, Experiment: 69173331, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gpr101 ISH: Mus musculus, Male, P56, coronal G protein-coupled receptor 101, entrez_id: 245424, Experiment: 72008495, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Perp ISH: Mus musculus, Male, P56, sagittal "PERP, TP53 apoptosis effector", entrez_id: 64058, Experiment: 68795445, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
E2f3 ISH: Mus musculus, Male, P56, sagittal E2f3, Experiment: 100145357, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pde11a ISH: Mus musculus, Male, P56, coronal phosphodiesterase 11A, entrez_id: 241489, Experiment: 75081007, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Hoxa4 ISH: Mus musculus, Male, P56, sagittal homeobox A4, entrez_id: 15401, Experiment: 69289141, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tle1 ISH: Mus musculus, Male, P56, coronal Tle1, Experiment: 1061, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Bmp4 ISH: Mus musculus, Male, P56, coronal Bmp4, Experiment: 1333, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Nrgn ISH: Mus musculus, Male, P56, coronal Nrgn, Experiment: 736, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Foxd1 ISH: Mus musculus, Male, P56, sagittal forkhead box D1, entrez_id: 15229, Experiment: 81790670, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Vip ISH: Mus musculus, Male, P56, coronal vasoactive intestinal polypeptide, entrez_id: 22353, Experiment: 77371835, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Hmbox1 ISH: Mus musculus, Male, P56, sagittal homeobox containing 1, entrez_id: 219150, Experiment: 69013086, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Irx3 ISH: Mus musculus, Male, P56, sagittal

Iroquois related homeobox 3, entrez_id: 16373, Experiment: 81654099, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cck ISH: Mus musculus, Male, P56, coronal

cholecystokinin, entrez_id: 12424, Experiment: 77869074, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nog ISH: Mus musculus, Male, P56, coronal

noggin, entrez_id: 18121, Experiment: 75084476, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Fmo1 ISH: Mus musculus, Male, P56, coronal

flavin containing monooxygenase 1, entrez_id: 14261, Experiment: 72008121, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gad1 ISH: Mus musculus, Male, P56, coronal

glutamate decarboxylase 1, entrez_id: 14415, Experiment: 69120554, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Mta3 ISH: Mus musculus, Male, P56, sagittal

metastasis associated 3, entrez_id: 116871, Experiment: 130537, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Fzd2 ISH: Mus musculus, Male, P56, sagittal

frizzled homolog 2 (Drosophila), entrez_id: 57265, Experiment: 81654103, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gtf3c2 ISH: Mus musculus, Male, P56, sagittal

Gtf3c2, Experiment: 8, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Psenen ISH: Mus musculus, Male, P56, sagittal

presenilin enhancer 2 homolog (C. elegans), entrez_id: 66340, Experiment: 69173331, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gpr101 ISH: Mus musculus, Male, P56, coronal

G protein-coupled receptor 101, entrez_id: 245424, Experiment: 72008495, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Perp ISH: Mus musculus, Male, P56, sagittal

"PERP, TP53 apoptosis effector", entrez_id: 64058, Experiment: 68795445, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

E2f3 ISH: Mus musculus, Male, P56, sagittal

E2f3, Experiment: 100145357, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pde11a ISH: Mus musculus, Male, P56, coronal

phosphodiesterase 11A, entrez_id: 241489, Experiment: 75081007, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Hoxa4 ISH: Mus musculus, Male, P56, sagittal

homeobox A4, entrez_id: 15401, Experiment: 69289141, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tle1 ISH: Mus musculus, Male, P56, coronal

Tle1, Experiment: 1061, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Bmp4 ISH: Mus musculus, Male, P56, coronal

Bmp4, Experiment: 1333, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Nrgn ISH: Mus musculus, Male, P56, coronal

Nrgn, Experiment: 736, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Foxd1 ISH: Mus musculus, Male, P56, sagittal

forkhead box D1, entrez_id: 15229, Experiment: 81790670, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Vip ISH: Mus musculus, Male, P56, coronal

vasoactive intestinal polypeptide, entrez_id: 22353, Experiment: 77371835, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Hmbox1 ISH: Mus musculus, Male, P56, sagittal

homeobox containing 1, entrez_id: 219150, Experiment: 69013086, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)