Allen Brain Atlas

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Gfra1 ISH: Mus musculus, Male, P56, sagittal glial cell line derived neurotrophic factor family receptor alpha 1, entrez_id: 14585, Experiment: 68797966, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Robo1 ISH: Mus musculus, Male, P56, coronal roundabout homolog 1 (Drosophila), entrez_id: 19876, Experiment: 73521820, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pafah1b1 ISH: Mus musculus, Male, P56, coronal Pafah1b1, Experiment: 2460, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cst3 ISH: Mus musculus, Male, P56, sagittal cystatin C, entrez_id: 13010, Experiment: 75496211, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gria1 ISH: Mus musculus, Male, P56, coronal "glutamate receptor, ionotropic, AMPA1 (alpha 1)", entrez_id: 14799, Experiment: 79591719, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ahctf1 ISH: Mus musculus, Male, P56, sagittal AT hook containing transcription factor 1, entrez_id: 226747, Experiment: 75931435, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pvrl1 ISH: Mus musculus, Male, P56, coronal poliovirus receptor-related 1, entrez_id: 58235, Experiment: 74363351, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Neurog2 ISH: Mus musculus, Male, P56, sagittal neurogenin 2, entrez_id: 11924, Experiment: 74579503, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dlg4 ISH: Mus musculus, Male, P56, sagittal "discs, large homolog 4 (Drosophila)", entrez_id: 13385, Experiment: 70918916, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pgrmc2 ISH: Mus musculus, Male, P56, sagittal progesterone receptor membrane component 2, entrez_id: 70804, Experiment: 69783059, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Wnt9b ISH: Mus musculus, Male, P56, sagittal Wnt9b, Experiment: 1893, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Neurod4 ISH: Mus musculus, Male, P56, sagittal neurogenic differentiation 4, entrez_id: 11923, Experiment: 77455008, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nr2f1 ISH: Mus musculus, Male, P56, sagittal Nr2f1, Experiment: 721, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Glul ISH: Mus musculus, Male, P56, sagittal glutamate-ammonia ligase (glutamine synthetase), entrez_id: 14645, Experiment: 67978757, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Eomes ISH: Mus musculus, Male, P56, coronal eomesodermin homolog (Xenopus laevis), entrez_id: 13813, Experiment: 80516770, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Rorc ISH: Mus musculus, Male, P56, sagittal RAR-related orphan receptor gamma, entrez_id: 19885, Experiment: 68203437, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Cacna2d3 ISH: Mus musculus, Male, P56, coronal "calcium channel, voltage-dependent, alpha2/delta subunit 3", entrez_id: 12294, Experiment: 70560338, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Clock ISH: Mus musculus, Male, P56, coronal Clock, Experiment: 273, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Grik5 ISH: Mus musculus, Male, P56, sagittal "glutamate receptor, ionotropic, kainate 5 (gamma 2)", entrez_id: 14809, Experiment: 68911017, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cbln3 ISH: Mus musculus, Male, P56, sagittal cerebellin 3 precursor protein, entrez_id: 56410, Experiment: 69540429, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Gfra1 ISH: Mus musculus, Male, P56, sagittal

glial cell line derived neurotrophic factor family receptor alpha 1, entrez_id: 14585, Experiment: 68797966, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Robo1 ISH: Mus musculus, Male, P56, coronal

roundabout homolog 1 (Drosophila), entrez_id: 19876, Experiment: 73521820, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pafah1b1 ISH: Mus musculus, Male, P56, coronal

Pafah1b1, Experiment: 2460, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cst3 ISH: Mus musculus, Male, P56, sagittal

cystatin C, entrez_id: 13010, Experiment: 75496211, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gria1 ISH: Mus musculus, Male, P56, coronal

"glutamate receptor, ionotropic, AMPA1 (alpha 1)", entrez_id: 14799, Experiment: 79591719, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ahctf1 ISH: Mus musculus, Male, P56, sagittal

AT hook containing transcription factor 1, entrez_id: 226747, Experiment: 75931435, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pvrl1 ISH: Mus musculus, Male, P56, coronal

poliovirus receptor-related 1, entrez_id: 58235, Experiment: 74363351, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Neurog2 ISH: Mus musculus, Male, P56, sagittal

neurogenin 2, entrez_id: 11924, Experiment: 74579503, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dlg4 ISH: Mus musculus, Male, P56, sagittal

"discs, large homolog 4 (Drosophila)", entrez_id: 13385, Experiment: 70918916, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pgrmc2 ISH: Mus musculus, Male, P56, sagittal

progesterone receptor membrane component 2, entrez_id: 70804, Experiment: 69783059, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Wnt9b ISH: Mus musculus, Male, P56, sagittal

Wnt9b, Experiment: 1893, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Neurod4 ISH: Mus musculus, Male, P56, sagittal

neurogenic differentiation 4, entrez_id: 11923, Experiment: 77455008, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nr2f1 ISH: Mus musculus, Male, P56, sagittal

Nr2f1, Experiment: 721, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Glul ISH: Mus musculus, Male, P56, sagittal

glutamate-ammonia ligase (glutamine synthetase), entrez_id: 14645, Experiment: 67978757, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Eomes ISH: Mus musculus, Male, P56, coronal

eomesodermin homolog (Xenopus laevis), entrez_id: 13813, Experiment: 80516770, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Rorc ISH: Mus musculus, Male, P56, sagittal

RAR-related orphan receptor gamma, entrez_id: 19885, Experiment: 68203437, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Cacna2d3 ISH: Mus musculus, Male, P56, coronal

"calcium channel, voltage-dependent, alpha2/delta subunit 3", entrez_id: 12294, Experiment: 70560338, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Clock ISH: Mus musculus, Male, P56, coronal

Clock, Experiment: 273, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Grik5 ISH: Mus musculus, Male, P56, sagittal

"glutamate receptor, ionotropic, kainate 5 (gamma 2)", entrez_id: 14809, Experiment: 68911017, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cbln3 ISH: Mus musculus, Male, P56, sagittal

cerebellin 3 precursor protein, entrez_id: 56410, Experiment: 69540429, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)