Allen Brain Atlas

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Ntf3 ISH: Mus musculus, Male, P56, sagittal neurotrophin 3, entrez_id: 18205, Experiment: 79913511, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Stxbp6 ISH: Mus musculus, Male, P56, sagittal syntaxin binding protein 6 (amisyn), entrez_id: 217517, Experiment: 67814207, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Angptl1 ISH: Mus musculus, Male, P56, sagittal angiopoietin-like 1, entrez_id: 72713, Experiment: 70230933, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gda ISH: Mus musculus, Male, P56, sagittal guanine deaminase, entrez_id: 14544, Experiment: 70276867, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Vegfb ISH: Mus musculus, Male, P56, coronal vascular endothelial growth factor B, entrez_id: 22340, Experiment: 75079746, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Fgf12 ISH: Mus musculus, Male, P56, sagittal Fgf12, Experiment: 425, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Runx2 ISH: Mus musculus, Male, P56, coronal runt related transcription factor 2, entrez_id: 12393, Experiment: 79556626, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ascl2 ISH: Mus musculus, Male, P56, sagittal achaete-scute complex homolog 2 (Drosophila), entrez_id: 17173, Experiment: 68341914, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Grid1 ISH: Mus musculus, Male, P56, sagittal "glutamate receptor, ionotropic, delta 1", entrez_id: 14803, Experiment: 69257707, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Foxa2 ISH: Mus musculus, Male, P56, sagittal forkhead box A2, entrez_id: 15376, Experiment: 71307316, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Aldh1a2 ISH: Mus musculus, Male, P56, coronal Aldh1a2, Experiment: 2025, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nfic ISH: Mus musculus, Male, P56, sagittal nuclear factor I/C, entrez_id: 18029, Experiment: 70813377, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Tfdp2 ISH: Mus musculus, Male, P56, sagittal transcription factor Dp 2, entrez_id: 211586, Experiment: 70228400, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cdh7 ISH: Mus musculus, Male, P56, sagittal "cadherin 7, type 2", entrez_id: 241201, Experiment: 69540683, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Elf2 ISH: Mus musculus, Male, P56, sagittal Elf2, Experiment: 1350, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Lhx4 ISH: Mus musculus, Male, P56, sagittal Lhx4, Experiment: 2378, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Wnt4 ISH: Mus musculus, Male, P56, coronal Wnt4, Experiment: 1444, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ncam2 ISH: Mus musculus, Male, P56, sagittal Ncam2, Experiment: 683, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pik3cb ISH: Mus musculus, Male, P56, sagittal "phosphatidylinositol 3-kinase, catalytic, beta polypeptide", entrez_id: 74769, Experiment: 70300792, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Foxa2 ISH: Mus musculus, Male, P56, sagittal forkhead box A2, entrez_id: 15376, Experiment: 77904790, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
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Ntf3 ISH: Mus musculus, Male, P56, sagittal

neurotrophin 3, entrez_id: 18205, Experiment: 79913511, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Stxbp6 ISH: Mus musculus, Male, P56, sagittal

syntaxin binding protein 6 (amisyn), entrez_id: 217517, Experiment: 67814207, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Angptl1 ISH: Mus musculus, Male, P56, sagittal

angiopoietin-like 1, entrez_id: 72713, Experiment: 70230933, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gda ISH: Mus musculus, Male, P56, sagittal

guanine deaminase, entrez_id: 14544, Experiment: 70276867, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Vegfb ISH: Mus musculus, Male, P56, coronal

vascular endothelial growth factor B, entrez_id: 22340, Experiment: 75079746, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Fgf12 ISH: Mus musculus, Male, P56, sagittal

Fgf12, Experiment: 425, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Runx2 ISH: Mus musculus, Male, P56, coronal

runt related transcription factor 2, entrez_id: 12393, Experiment: 79556626, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ascl2 ISH: Mus musculus, Male, P56, sagittal

achaete-scute complex homolog 2 (Drosophila), entrez_id: 17173, Experiment: 68341914, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Grid1 ISH: Mus musculus, Male, P56, sagittal

"glutamate receptor, ionotropic, delta 1", entrez_id: 14803, Experiment: 69257707, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Foxa2 ISH: Mus musculus, Male, P56, sagittal

forkhead box A2, entrez_id: 15376, Experiment: 71307316, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Aldh1a2 ISH: Mus musculus, Male, P56, coronal

Aldh1a2, Experiment: 2025, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nfic ISH: Mus musculus, Male, P56, sagittal

nuclear factor I/C, entrez_id: 18029, Experiment: 70813377, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Tfdp2 ISH: Mus musculus, Male, P56, sagittal

transcription factor Dp 2, entrez_id: 211586, Experiment: 70228400, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cdh7 ISH: Mus musculus, Male, P56, sagittal

"cadherin 7, type 2", entrez_id: 241201, Experiment: 69540683, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Elf2 ISH: Mus musculus, Male, P56, sagittal

Elf2, Experiment: 1350, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Lhx4 ISH: Mus musculus, Male, P56, sagittal

Lhx4, Experiment: 2378, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Wnt4 ISH: Mus musculus, Male, P56, coronal

Wnt4, Experiment: 1444, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ncam2 ISH: Mus musculus, Male, P56, sagittal

Ncam2, Experiment: 683, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pik3cb ISH: Mus musculus, Male, P56, sagittal

"phosphatidylinositol 3-kinase, catalytic, beta polypeptide", entrez_id: 74769, Experiment: 70300792, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Foxa2 ISH: Mus musculus, Male, P56, sagittal

forkhead box A2, entrez_id: 15376, Experiment: 77904790, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)