Allen Brain Atlas

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Stard5 ISH: Mus musculus, Male, P56, coronal StAR-related lipid transfer (START) domain containing 5, entrez_id: 170460, Experiment: 70813909, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Elf5 ISH: Mus musculus, Male, P56, sagittal E74-like factor 5, entrez_id: 13711, Experiment: 119684, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Per1 ISH: Mus musculus, Male, P56, sagittal period circadian clock 1, entrez_id: 18626, Experiment: 71161141, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Crtac1 ISH: Mus musculus, Male, P56, coronal cartilage acidic protein 1, entrez_id: 72832, Experiment: 75749739, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tlr2 ISH: Mus musculus, Male, P56, sagittal toll-like receptor 2, entrez_id: 24088, Experiment: 68546494, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Lgmn ISH: Mus musculus, Male, P56, sagittal legumain, entrez_id: 19141, Experiment: 69736118, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Grp ISH: Mus musculus, Male, P56, coronal gastrin releasing peptide, entrez_id: 225642, Experiment: 79591637, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nr3c2 ISH: Mus musculus, Male, P56, coronal Nr3c2, Experiment: 730, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nab1 ISH: Mus musculus, Male, P56, coronal Ngfi-A binding protein 1, entrez_id: 17936, Experiment: 70743878, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dusp6 ISH: Mus musculus, Male, P56, sagittal dual specificity phosphatase 6, entrez_id: 67603, Experiment: 513256, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Amotl1 ISH: Mus musculus, Male, P56, coronal angiomotin-like 1, entrez_id: 75723, Experiment: 75038463, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pgrmc2 ISH: Mus musculus, Male, P56, coronal progesterone receptor membrane component 2, entrez_id: 70804, Experiment: 74882697, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Grm4 ISH: Mus musculus, Male, P56, sagittal "glutamate receptor, metabotropic 4", entrez_id: 268934, Experiment: 69257737, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Mlxipl ISH: Mus musculus, Male, P56, sagittal Mlxipl, Experiment: 1933, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pax6 ISH: Mus musculus, Male, P56, sagittal paired box 6, entrez_id: 18508, Experiment: 79677341, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Shank3 ISH: Mus musculus, Male, P56, sagittal SH3/ankyrin domain gene 3, entrez_id: 58234, Experiment: 69816840, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Rab3b ISH: Mus musculus, Male, P56, coronal "RAB3B, member RAS oncogene family", entrez_id: 69908, Experiment: 70436738, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cntn3 ISH: Mus musculus, Male, P56, coronal Cntn3, Experiment: 159, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Rxfp1 ISH: Mus musculus, Male, P56, sagittal relaxin/insulin-like family peptide receptor 1, entrez_id: 381489, Experiment: 75985899, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Grhl1 ISH: Mus musculus, Male, P56, sagittal grainyhead-like 1 (Drosophila), entrez_id: 195733, Experiment: 68076900, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Stard5 ISH: Mus musculus, Male, P56, coronal

StAR-related lipid transfer (START) domain containing 5, entrez_id: 170460, Experiment: 70813909, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Elf5 ISH: Mus musculus, Male, P56, sagittal

E74-like factor 5, entrez_id: 13711, Experiment: 119684, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Per1 ISH: Mus musculus, Male, P56, sagittal

period circadian clock 1, entrez_id: 18626, Experiment: 71161141, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Crtac1 ISH: Mus musculus, Male, P56, coronal

cartilage acidic protein 1, entrez_id: 72832, Experiment: 75749739, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tlr2 ISH: Mus musculus, Male, P56, sagittal

toll-like receptor 2, entrez_id: 24088, Experiment: 68546494, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Lgmn ISH: Mus musculus, Male, P56, sagittal

legumain, entrez_id: 19141, Experiment: 69736118, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Grp ISH: Mus musculus, Male, P56, coronal

gastrin releasing peptide, entrez_id: 225642, Experiment: 79591637, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nr3c2 ISH: Mus musculus, Male, P56, coronal

Nr3c2, Experiment: 730, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nab1 ISH: Mus musculus, Male, P56, coronal

Ngfi-A binding protein 1, entrez_id: 17936, Experiment: 70743878, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dusp6 ISH: Mus musculus, Male, P56, sagittal

dual specificity phosphatase 6, entrez_id: 67603, Experiment: 513256, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Amotl1 ISH: Mus musculus, Male, P56, coronal

angiomotin-like 1, entrez_id: 75723, Experiment: 75038463, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pgrmc2 ISH: Mus musculus, Male, P56, coronal

progesterone receptor membrane component 2, entrez_id: 70804, Experiment: 74882697, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Grm4 ISH: Mus musculus, Male, P56, sagittal

"glutamate receptor, metabotropic 4", entrez_id: 268934, Experiment: 69257737, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Mlxipl ISH: Mus musculus, Male, P56, sagittal

Mlxipl, Experiment: 1933, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pax6 ISH: Mus musculus, Male, P56, sagittal

paired box 6, entrez_id: 18508, Experiment: 79677341, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Shank3 ISH: Mus musculus, Male, P56, sagittal

SH3/ankyrin domain gene 3, entrez_id: 58234, Experiment: 69816840, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Rab3b ISH: Mus musculus, Male, P56, coronal

"RAB3B, member RAS oncogene family", entrez_id: 69908, Experiment: 70436738, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cntn3 ISH: Mus musculus, Male, P56, coronal

Cntn3, Experiment: 159, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Rxfp1 ISH: Mus musculus, Male, P56, sagittal

relaxin/insulin-like family peptide receptor 1, entrez_id: 381489, Experiment: 75985899, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Grhl1 ISH: Mus musculus, Male, P56, sagittal

grainyhead-like 1 (Drosophila), entrez_id: 195733, Experiment: 68076900, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)