Allen Brain Atlas

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Sema3a ISH: Mus musculus, Male, P56, coronal Sema3a, Experiment: 937, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Plxnd1 ISH: Mus musculus, Male, P56, sagittal plexin D1, entrez_id: 67784, Experiment: 74359449, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Oxt ISH: Mus musculus, Male, P56, sagittal oxytocin, entrez_id: 18429, Experiment: 78153165, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Sema3d ISH: Mus musculus, Male, P56, coronal "sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D", entrez_id: 108151, Experiment: 74581376, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Bdnf ISH: Mus musculus, Male, P56, coronal brain derived neurotrophic factor, entrez_id: 12064, Experiment: 79587720, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Apba1 ISH: Mus musculus, Male, P56, coronal "amyloid beta (A4) precursor protein binding, family A, member 1", entrez_id: 319924, Experiment: 77869854, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Oprk1 ISH: Mus musculus, Male, P56, sagittal "opioid receptor, kappa 1", entrez_id: 18387, Experiment: 69258238, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Stat5b ISH: Mus musculus, Male, P56, coronal signal transducer and activator of transcription 5B, entrez_id: 20851, Experiment: 71016584, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Plp1 ISH: Mus musculus, Male, P56, sagittal proteolipid protein (myelin) 1, entrez_id: 18823, Experiment: 75492725, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Rln1 ISH: Mus musculus, Male, P56, sagittal relaxin 1, entrez_id: 19773, Experiment: 71020890, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pax4 ISH: Mus musculus, Male, P56, sagittal paired box 4, entrez_id: 18506, Experiment: 69289667, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tyro3 ISH: Mus musculus, Male, P56, coronal TYRO3 protein tyrosine kinase 3, entrez_id: 22174, Experiment: 72119607, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Npffr2 ISH: Mus musculus, Male, P56, sagittal neuropeptide FF receptor 2, entrez_id: 104443, Experiment: 69257642, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Mef2a ISH: Mus musculus, Male, P56, sagittal Mef2a, Experiment: 100142513, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
mCG146432 ISH: Mus musculus, Male, P56, sagittal AB mCG146432, Experiment: 71212467, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cebpd ISH: Mus musculus, Male, P56, coronal "CCAAT/enhancer binding protein (C/EBP), delta", entrez_id: 12609, Experiment: 76115722, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Far2 ISH: Mus musculus, Male, P56, coronal fatty acyl CoA reductase 2, entrez_id: 330450, Experiment: 71358652, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Celsr1 ISH: Mus musculus, Male, P56, sagittal "cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)", entrez_id: 12614, Experiment: 71307238, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Trhr ISH: Mus musculus, Male, P56, coronal thyrotropin releasing hormone receptor, entrez_id: 22045, Experiment: 72008492, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Fgf1 ISH: Mus musculus, Male, P56, sagittal fibroblast growth factor 1, entrez_id: 14164, Experiment: 79360312, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Sema3a ISH: Mus musculus, Male, P56, coronal

Sema3a, Experiment: 937, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Plxnd1 ISH: Mus musculus, Male, P56, sagittal

plexin D1, entrez_id: 67784, Experiment: 74359449, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Oxt ISH: Mus musculus, Male, P56, sagittal

oxytocin, entrez_id: 18429, Experiment: 78153165, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Sema3d ISH: Mus musculus, Male, P56, coronal

"sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D", entrez_id: 108151, Experiment: 74581376, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Bdnf ISH: Mus musculus, Male, P56, coronal

brain derived neurotrophic factor, entrez_id: 12064, Experiment: 79587720, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Apba1 ISH: Mus musculus, Male, P56, coronal

"amyloid beta (A4) precursor protein binding, family A, member 1", entrez_id: 319924, Experiment: 77869854, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Oprk1 ISH: Mus musculus, Male, P56, sagittal

"opioid receptor, kappa 1", entrez_id: 18387, Experiment: 69258238, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Stat5b ISH: Mus musculus, Male, P56, coronal

signal transducer and activator of transcription 5B, entrez_id: 20851, Experiment: 71016584, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Plp1 ISH: Mus musculus, Male, P56, sagittal

proteolipid protein (myelin) 1, entrez_id: 18823, Experiment: 75492725, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Rln1 ISH: Mus musculus, Male, P56, sagittal

relaxin 1, entrez_id: 19773, Experiment: 71020890, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pax4 ISH: Mus musculus, Male, P56, sagittal

paired box 4, entrez_id: 18506, Experiment: 69289667, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tyro3 ISH: Mus musculus, Male, P56, coronal

TYRO3 protein tyrosine kinase 3, entrez_id: 22174, Experiment: 72119607, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Npffr2 ISH: Mus musculus, Male, P56, sagittal

neuropeptide FF receptor 2, entrez_id: 104443, Experiment: 69257642, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Mef2a ISH: Mus musculus, Male, P56, sagittal

Mef2a, Experiment: 100142513, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

mCG146432 ISH: Mus musculus, Male, P56, sagittal

AB mCG146432, Experiment: 71212467, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cebpd ISH: Mus musculus, Male, P56, coronal

"CCAAT/enhancer binding protein (C/EBP), delta", entrez_id: 12609, Experiment: 76115722, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Far2 ISH: Mus musculus, Male, P56, coronal

fatty acyl CoA reductase 2, entrez_id: 330450, Experiment: 71358652, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Celsr1 ISH: Mus musculus, Male, P56, sagittal

"cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)", entrez_id: 12614, Experiment: 71307238, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Trhr ISH: Mus musculus, Male, P56, coronal

thyrotropin releasing hormone receptor, entrez_id: 22045, Experiment: 72008492, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Fgf1 ISH: Mus musculus, Male, P56, sagittal

fibroblast growth factor 1, entrez_id: 14164, Experiment: 79360312, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)