Allen Brain Atlas

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C230009H10Rik ISH: Mus musculus, Male, P56, sagittal RIKEN cDNA C230009H10 gene, entrez_id: 320399, Experiment: 69530870, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Grm3 ISH: Mus musculus, Male, P56, sagittal Grm3, Experiment: 540, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Gpr88 ISH: Mus musculus, Male, P56, coronal Gpr88, Experiment: 519, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Rhox10 ISH: Mus musculus, Male, P56, sagittal reproductive homeobox 10, entrez_id: 434769, Experiment: 71764506, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Mest ISH: Mus musculus, Male, P56, sagittal mesoderm specific transcript, entrez_id: 17294, Experiment: 69752405, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ntsr1 ISH: Mus musculus, Male, P56, coronal neurotensin receptor 1, entrez_id: 18216, Experiment: 73519704, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Chrna3 ISH: Mus musculus, Male, P56, coronal "cholinergic receptor, nicotinic, alpha polypeptide 3", entrez_id: 110834, Experiment: 72119655, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Epha10 ISH: Mus musculus, Male, P56, coronal Eph receptor A10, entrez_id: 230735, Experiment: 73930823, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Calb1 ISH: Mus musculus, Male, P56, sagittal calbindin 1, entrez_id: 12307, Experiment: 75492683, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Slc6a4 ISH: Mus musculus, Male, P56, sagittal Slc6a4, Experiment: 2624, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Wnt5a ISH: Mus musculus, Male, P56, coronal "wingless-type MMTV integration site family, member 5A", entrez_id: 22418, Experiment: 79556660, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Bcl2l11 ISH: Mus musculus, Male, P56, sagittal BCL2-like 11 (apoptosis facilitator), entrez_id: 12125, Experiment: 68342141, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tac1 ISH: Mus musculus, Male, P56, coronal Tac1, Experiment: 1038, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gm6753 ISH: Mus musculus, Male, P56, sagittal predicted gene 6753, entrez_id: 627415, Experiment: 74359550, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gja1 ISH: Mus musculus, Male, P56, sagittal "gap junction protein, alpha 1", entrez_id: 14609, Experiment: 104609, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Otof ISH: Mus musculus, Male, P56, sagittal otoferlin, entrez_id: 83762, Experiment: 69782605, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tox3 ISH: Mus musculus, Male, P56, sagittal TOX high mobility group box family member 3, entrez_id: 244579, Experiment: 69549609, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cckar ISH: Mus musculus, Male, P56, sagittal Cckar, Experiment: 204, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dscaml1 ISH: Mus musculus, Male, P56, coronal Down syndrome cell adhesion molecule like 1, entrez_id: 114873, Experiment: 75080643, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Uncx ISH: Mus musculus, Male, P56, sagittal Uncx, Experiment: 100144532, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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C230009H10Rik ISH: Mus musculus, Male, P56, sagittal

RIKEN cDNA C230009H10 gene, entrez_id: 320399, Experiment: 69530870, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Grm3 ISH: Mus musculus, Male, P56, sagittal

Grm3, Experiment: 540, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Gpr88 ISH: Mus musculus, Male, P56, coronal

Gpr88, Experiment: 519, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Rhox10 ISH: Mus musculus, Male, P56, sagittal

reproductive homeobox 10, entrez_id: 434769, Experiment: 71764506, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Mest ISH: Mus musculus, Male, P56, sagittal

mesoderm specific transcript, entrez_id: 17294, Experiment: 69752405, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ntsr1 ISH: Mus musculus, Male, P56, coronal

neurotensin receptor 1, entrez_id: 18216, Experiment: 73519704, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Chrna3 ISH: Mus musculus, Male, P56, coronal

"cholinergic receptor, nicotinic, alpha polypeptide 3", entrez_id: 110834, Experiment: 72119655, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Epha10 ISH: Mus musculus, Male, P56, coronal

Eph receptor A10, entrez_id: 230735, Experiment: 73930823, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Calb1 ISH: Mus musculus, Male, P56, sagittal

calbindin 1, entrez_id: 12307, Experiment: 75492683, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Slc6a4 ISH: Mus musculus, Male, P56, sagittal

Slc6a4, Experiment: 2624, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Wnt5a ISH: Mus musculus, Male, P56, coronal

"wingless-type MMTV integration site family, member 5A", entrez_id: 22418, Experiment: 79556660, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Bcl2l11 ISH: Mus musculus, Male, P56, sagittal

BCL2-like 11 (apoptosis facilitator), entrez_id: 12125, Experiment: 68342141, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tac1 ISH: Mus musculus, Male, P56, coronal

Tac1, Experiment: 1038, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gm6753 ISH: Mus musculus, Male, P56, sagittal

predicted gene 6753, entrez_id: 627415, Experiment: 74359550, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gja1 ISH: Mus musculus, Male, P56, sagittal

"gap junction protein, alpha 1", entrez_id: 14609, Experiment: 104609, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Otof ISH: Mus musculus, Male, P56, sagittal

otoferlin, entrez_id: 83762, Experiment: 69782605, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tox3 ISH: Mus musculus, Male, P56, sagittal

TOX high mobility group box family member 3, entrez_id: 244579, Experiment: 69549609, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cckar ISH: Mus musculus, Male, P56, sagittal

Cckar, Experiment: 204, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dscaml1 ISH: Mus musculus, Male, P56, coronal

Down syndrome cell adhesion molecule like 1, entrez_id: 114873, Experiment: 75080643, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Uncx ISH: Mus musculus, Male, P56, sagittal

Uncx, Experiment: 100144532, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)