Allen Brain Atlas

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Foxn1 ISH: Mus musculus, Male, P56, sagittal forkhead box N1, entrez_id: 15218, Experiment: 71307328, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Hmx3 ISH: Mus musculus, Male, P56, coronal H6 homeobox 3, entrez_id: 15373, Experiment: 74641309, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Grp ISH: Mus musculus, Male, P56, sagittal gastrin releasing peptide, entrez_id: 225642, Experiment: 79913274, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Zfp207 ISH: Mus musculus, Male, P56, sagittal zinc finger protein 207, entrez_id: 22680, Experiment: 68203477, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Rgs10 ISH: Mus musculus, Male, P56, coronal regulator of G-protein signalling 10, entrez_id: 67865, Experiment: 74511849, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Hap1 ISH: Mus musculus, Male, P56, coronal Hap1, Experiment: 552, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Fzd9 ISH: Mus musculus, Male, P56, coronal frizzled homolog 9 (Drosophila), entrez_id: 14371, Experiment: 73907498, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gap43 ISH: Mus musculus, Male, P56, sagittal growth associated protein 43, entrez_id: 14432, Experiment: 130156, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Homer1 ISH: Mus musculus, Male, P56, sagittal Homer1, Experiment: 1749, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nr4a1 ISH: Mus musculus, Male, P56, sagittal Nr4a1, Experiment: 1793, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Col6a1 ISH: Mus musculus, Male, P56, sagittal Col6a1, Experiment: 291, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Abl1 ISH: Mus musculus, Male, P56, sagittal "c-abl oncogene 1, non-receptor tyrosine kinase", entrez_id: 11350, Experiment: 71161531, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Chrm1 ISH: Mus musculus, Male, P56, coronal "cholinergic receptor, muscarinic 1, CNS", entrez_id: 12669, Experiment: 73907497, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Id3 ISH: Mus musculus, Male, P56, sagittal inhibitor of DNA binding 3, entrez_id: 15903, Experiment: 81654091, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nov ISH: Mus musculus, Male, P56, sagittal nephroblastoma overexpressed gene, entrez_id: 18133, Experiment: 75492634, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pcdhb9 ISH: Mus musculus, Male, P56, sagittal protocadherin beta 9, entrez_id: 93880, Experiment: 79354780, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Dtx4 ISH: Mus musculus, Male, P56, sagittal deltex 4 homolog (Drosophila), entrez_id: 207521, Experiment: 69671642, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Hoxd9 ISH: Mus musculus, Male, P56, sagittal Hoxd9, Experiment: 1624, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cdh13 ISH: Mus musculus, Male, P56, coronal Cdh13, Experiment: 234, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cd109 ISH: Mus musculus, Male, P56, coronal CD109 antigen, entrez_id: 235505, Experiment: 73931384, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Foxn1 ISH: Mus musculus, Male, P56, sagittal

forkhead box N1, entrez_id: 15218, Experiment: 71307328, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Hmx3 ISH: Mus musculus, Male, P56, coronal

H6 homeobox 3, entrez_id: 15373, Experiment: 74641309, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Grp ISH: Mus musculus, Male, P56, sagittal

gastrin releasing peptide, entrez_id: 225642, Experiment: 79913274, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Zfp207 ISH: Mus musculus, Male, P56, sagittal

zinc finger protein 207, entrez_id: 22680, Experiment: 68203477, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Rgs10 ISH: Mus musculus, Male, P56, coronal

regulator of G-protein signalling 10, entrez_id: 67865, Experiment: 74511849, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Hap1 ISH: Mus musculus, Male, P56, coronal

Hap1, Experiment: 552, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Fzd9 ISH: Mus musculus, Male, P56, coronal

frizzled homolog 9 (Drosophila), entrez_id: 14371, Experiment: 73907498, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gap43 ISH: Mus musculus, Male, P56, sagittal

growth associated protein 43, entrez_id: 14432, Experiment: 130156, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Homer1 ISH: Mus musculus, Male, P56, sagittal

Homer1, Experiment: 1749, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nr4a1 ISH: Mus musculus, Male, P56, sagittal

Nr4a1, Experiment: 1793, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Col6a1 ISH: Mus musculus, Male, P56, sagittal

Col6a1, Experiment: 291, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Abl1 ISH: Mus musculus, Male, P56, sagittal

"c-abl oncogene 1, non-receptor tyrosine kinase", entrez_id: 11350, Experiment: 71161531, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Chrm1 ISH: Mus musculus, Male, P56, coronal

"cholinergic receptor, muscarinic 1, CNS", entrez_id: 12669, Experiment: 73907497, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Id3 ISH: Mus musculus, Male, P56, sagittal

inhibitor of DNA binding 3, entrez_id: 15903, Experiment: 81654091, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nov ISH: Mus musculus, Male, P56, sagittal

nephroblastoma overexpressed gene, entrez_id: 18133, Experiment: 75492634, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pcdhb9 ISH: Mus musculus, Male, P56, sagittal

protocadherin beta 9, entrez_id: 93880, Experiment: 79354780, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Dtx4 ISH: Mus musculus, Male, P56, sagittal

deltex 4 homolog (Drosophila), entrez_id: 207521, Experiment: 69671642, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Hoxd9 ISH: Mus musculus, Male, P56, sagittal

Hoxd9, Experiment: 1624, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cdh13 ISH: Mus musculus, Male, P56, coronal

Cdh13, Experiment: 234, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cd109 ISH: Mus musculus, Male, P56, coronal

CD109 antigen, entrez_id: 235505, Experiment: 73931384, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)