Allen Brain Atlas

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Cdhr5 ISH: Mus musculus, Male, P56, sagittal cadherin-related family member 5, entrez_id: 72040, Experiment: 69013660, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dab1 ISH: Mus musculus, Male, P56, sagittal disabled 1, entrez_id: 13131, Experiment: 69531085, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Epha1 ISH: Mus musculus, Male, P56, coronal Eph receptor A1, entrez_id: 13835, Experiment: 74640882, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gata2 ISH: Mus musculus, Male, P56, coronal Gata2, Experiment: 100, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Syt10 ISH: Mus musculus, Male, P56, coronal Syt10, Experiment: 1017, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Lrmp ISH: Mus musculus, Male, P56, sagittal lymphoid-restricted membrane protein, entrez_id: 16970, Experiment: 71656652, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Fzd3 ISH: Mus musculus, Male, P56, sagittal Fzd3, Experiment: 467, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
B3gnt2 ISH: Mus musculus, Male, P56, sagittal "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2", entrez_id: 53625, Experiment: 70474749, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tcf3 ISH: Mus musculus, Male, P56, sagittal transcription factor 3, entrez_id: 21423, Experiment: 76135518, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Zbtb7a ISH: Mus musculus, Male, P56, sagittal zinc finger and BTB domain containing 7a, entrez_id: 16969, Experiment: 69290746, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Spib ISH: Mus musculus, Male, P56, sagittal Spi-B transcription factor (Spi-1/PU.1 related), entrez_id: 272382, Experiment: 77904755, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Spp1 ISH: Mus musculus, Male, P56, coronal secreted phosphoprotein 1, entrez_id: 20750, Experiment: 75651180, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dbh ISH: Mus musculus, Male, P56, coronal dopamine beta hydroxylase, entrez_id: 13166, Experiment: 79907893, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Slc16a2 ISH: Mus musculus, Male, P56, sagittal "solute carrier family 16 (monocarboxylic acid transporters), member 2", entrez_id: 20502, Experiment: 69873821, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Chst2 ISH: Mus musculus, Male, P56, coronal carbohydrate sulfotransferase 2, entrez_id: 54371, Experiment: 72109633, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Six5 ISH: Mus musculus, Male, P56, sagittal sine oculis-related homeobox 5, entrez_id: 20475, Experiment: 81657675, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cacng7 ISH: Mus musculus, Male, P56, coronal "calcium channel, voltage-dependent, gamma subunit 7", entrez_id: 81904, Experiment: 74750054, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Bhlhe41 ISH: Mus musculus, Male, P56, sagittal "basic helix-loop-helix family, member e41", entrez_id: 79362, Experiment: 69816506, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Daam2 ISH: Mus musculus, Male, P56, coronal dishevelled associated activator of morphogenesis 2, entrez_id: 76441, Experiment: 74511880, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Dkk3 ISH: Mus musculus, Male, P56, sagittal dickkopf homolog 3 (Xenopus laevis), entrez_id: 50781, Experiment: 75457695, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Cdhr5 ISH: Mus musculus, Male, P56, sagittal

cadherin-related family member 5, entrez_id: 72040, Experiment: 69013660, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dab1 ISH: Mus musculus, Male, P56, sagittal

disabled 1, entrez_id: 13131, Experiment: 69531085, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Epha1 ISH: Mus musculus, Male, P56, coronal

Eph receptor A1, entrez_id: 13835, Experiment: 74640882, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gata2 ISH: Mus musculus, Male, P56, coronal

Gata2, Experiment: 100, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Syt10 ISH: Mus musculus, Male, P56, coronal

Syt10, Experiment: 1017, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Lrmp ISH: Mus musculus, Male, P56, sagittal

lymphoid-restricted membrane protein, entrez_id: 16970, Experiment: 71656652, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Fzd3 ISH: Mus musculus, Male, P56, sagittal

Fzd3, Experiment: 467, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

B3gnt2 ISH: Mus musculus, Male, P56, sagittal

"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2", entrez_id: 53625, Experiment: 70474749, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tcf3 ISH: Mus musculus, Male, P56, sagittal

transcription factor 3, entrez_id: 21423, Experiment: 76135518, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Zbtb7a ISH: Mus musculus, Male, P56, sagittal

zinc finger and BTB domain containing 7a, entrez_id: 16969, Experiment: 69290746, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Spib ISH: Mus musculus, Male, P56, sagittal

Spi-B transcription factor (Spi-1/PU.1 related), entrez_id: 272382, Experiment: 77904755, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Spp1 ISH: Mus musculus, Male, P56, coronal

secreted phosphoprotein 1, entrez_id: 20750, Experiment: 75651180, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dbh ISH: Mus musculus, Male, P56, coronal

dopamine beta hydroxylase, entrez_id: 13166, Experiment: 79907893, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Slc16a2 ISH: Mus musculus, Male, P56, sagittal

"solute carrier family 16 (monocarboxylic acid transporters), member 2", entrez_id: 20502, Experiment: 69873821, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Chst2 ISH: Mus musculus, Male, P56, coronal

carbohydrate sulfotransferase 2, entrez_id: 54371, Experiment: 72109633, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Six5 ISH: Mus musculus, Male, P56, sagittal

sine oculis-related homeobox 5, entrez_id: 20475, Experiment: 81657675, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cacng7 ISH: Mus musculus, Male, P56, coronal

"calcium channel, voltage-dependent, gamma subunit 7", entrez_id: 81904, Experiment: 74750054, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Bhlhe41 ISH: Mus musculus, Male, P56, sagittal

"basic helix-loop-helix family, member e41", entrez_id: 79362, Experiment: 69816506, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Daam2 ISH: Mus musculus, Male, P56, coronal

dishevelled associated activator of morphogenesis 2, entrez_id: 76441, Experiment: 74511880, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Dkk3 ISH: Mus musculus, Male, P56, sagittal

dickkopf homolog 3 (Xenopus laevis), entrez_id: 50781, Experiment: 75457695, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)