Allen Brain Atlas

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Tgif1 ISH: Mus musculus, Male, P56, sagittal TGFB-induced factor homeobox 1, entrez_id: 21815, Experiment: 68203434, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nr1d2 ISH: Mus musculus, Male, P56, coronal Nr1d2, Experiment: 1245, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cldn5 ISH: Mus musculus, Male, P56, sagittal claudin 5, entrez_id: 12741, Experiment: 513471, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Nrp1 ISH: Mus musculus, Male, P56, sagittal neuropilin 1, entrez_id: 18186, Experiment: 79913171, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Ebf2 ISH: Mus musculus, Male, P56, sagittal early B cell factor 2, entrez_id: 13592, Experiment: 70431301, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Calb1 ISH: Mus musculus, Male, P56, coronal Calb1, Experiment: 1166, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Lhx4 ISH: Mus musculus, Male, P56, coronal Lhx4, Experiment: 2377, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Alcam ISH: Mus musculus, Male, P56, sagittal activated leukocyte cell adhesion molecule, entrez_id: 11658, Experiment: 130155, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Wnt7b ISH: Mus musculus, Male, P56, coronal "wingless-type MMTV integration site family, member 7B", entrez_id: 22422, Experiment: 72081555, C57BL/6J, Failed QC Studies: Developing Mouse Brain, Mouse Brain
Inhbb ISH: Mus musculus, Male, P56, sagittal inhibin beta-B, entrez_id: 16324, Experiment: 71529959, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Loxl1 ISH: Mus musculus, Male, P56, coronal lysyl oxidase-like 1, entrez_id: 16949, Experiment: 70805934, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Arc ISH: Mus musculus, Male, P56, coronal activity regulated cytoskeletal-associated protein, entrez_id: 11838, Experiment: 74273120, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Rcn1 ISH: Mus musculus, Male, P56, coronal reticulocalbin 1, entrez_id: 19672, Experiment: 79591573, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Pvalb ISH: Mus musculus, Male, P56, sagittal parvalbumin, entrez_id: 19293, Experiment: 75496201, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nrgn ISH: Mus musculus, Male, P56, coronal neurogranin, entrez_id: 64011, Experiment: 69153759, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Nnat ISH: Mus musculus, Male, P56, coronal neuronatin, entrez_id: 18111, Experiment: 655497, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Gpr37 ISH: Mus musculus, Male, P56, sagittal Gpr37, Experiment: 2272, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Tgfb2 ISH: Mus musculus, Male, P56, sagittal "transforming growth factor, beta 2", entrez_id: 21808, Experiment: 75694417, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Igfbp6 ISH: Mus musculus, Male, P56, coronal insulin-like growth factor binding protein 6, entrez_id: 16012, Experiment: 70928248, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Klf2 ISH: Mus musculus, Male, P56, sagittal Kruppel-like factor 2 (lung), entrez_id: 16598, Experiment: 74635803, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
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Tgif1 ISH: Mus musculus, Male, P56, sagittal

TGFB-induced factor homeobox 1, entrez_id: 21815, Experiment: 68203434, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nr1d2 ISH: Mus musculus, Male, P56, coronal

Nr1d2, Experiment: 1245, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cldn5 ISH: Mus musculus, Male, P56, sagittal

claudin 5, entrez_id: 12741, Experiment: 513471, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Nrp1 ISH: Mus musculus, Male, P56, sagittal

neuropilin 1, entrez_id: 18186, Experiment: 79913171, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Ebf2 ISH: Mus musculus, Male, P56, sagittal

early B cell factor 2, entrez_id: 13592, Experiment: 70431301, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Calb1 ISH: Mus musculus, Male, P56, coronal

Calb1, Experiment: 1166, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Lhx4 ISH: Mus musculus, Male, P56, coronal

Lhx4, Experiment: 2377, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Alcam ISH: Mus musculus, Male, P56, sagittal

activated leukocyte cell adhesion molecule, entrez_id: 11658, Experiment: 130155, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Wnt7b ISH: Mus musculus, Male, P56, coronal

"wingless-type MMTV integration site family, member 7B", entrez_id: 22422, Experiment: 72081555, C57BL/6J, Failed QC

Studies: Developing Mouse Brain, Mouse Brain

Inhbb ISH: Mus musculus, Male, P56, sagittal

inhibin beta-B, entrez_id: 16324, Experiment: 71529959, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Loxl1 ISH: Mus musculus, Male, P56, coronal

lysyl oxidase-like 1, entrez_id: 16949, Experiment: 70805934, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Arc ISH: Mus musculus, Male, P56, coronal

activity regulated cytoskeletal-associated protein, entrez_id: 11838, Experiment: 74273120, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Rcn1 ISH: Mus musculus, Male, P56, coronal

reticulocalbin 1, entrez_id: 19672, Experiment: 79591573, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Pvalb ISH: Mus musculus, Male, P56, sagittal

parvalbumin, entrez_id: 19293, Experiment: 75496201, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nrgn ISH: Mus musculus, Male, P56, coronal

neurogranin, entrez_id: 64011, Experiment: 69153759, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Nnat ISH: Mus musculus, Male, P56, coronal

neuronatin, entrez_id: 18111, Experiment: 655497, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Gpr37 ISH: Mus musculus, Male, P56, sagittal

Gpr37, Experiment: 2272, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Tgfb2 ISH: Mus musculus, Male, P56, sagittal

"transforming growth factor, beta 2", entrez_id: 21808, Experiment: 75694417, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Igfbp6 ISH: Mus musculus, Male, P56, coronal

insulin-like growth factor binding protein 6, entrez_id: 16012, Experiment: 70928248, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Klf2 ISH: Mus musculus, Male, P56, sagittal

Kruppel-like factor 2 (lung), entrez_id: 16598, Experiment: 74635803, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)