Allen Brain Atlas

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Ipcef1 RNA Sequencing Experiments interaction protein for cytohesin exchange factors 1, Entrez_id: 320495 Study: Mouse Cell Types - transcriptomics data
Rmnd5b RNA Sequencing Experiments required for meiotic nuclear division 5 homolog B (S. cerevisiae), Entrez_id: 66089 Study: Mouse Cell Types - transcriptomics data
Pkdrej RNA Sequencing Experiments "polycystic kidney disease (polycystin) and REJ (sperm receptor for egg jelly homolog, sea urchin)", Entrez_id: 18766 Study: Mouse Cell Types - transcriptomics data
Phax RNA Sequencing Experiments phosphorylated adaptor for RNA export, Entrez_id: 56698 Study: Mouse Cell Types - transcriptomics data
Ccs RNA Sequencing Experiments copper chaperone for superoxide dismutase, Entrez_id: 12460 Study: Mouse Cell Types - transcriptomics data
Cadps2 RNA Sequencing Experiments Ca2+-dependent activator protein for secretion 2, Entrez_id: 320405 Study: Mouse Cell Types - transcriptomics data
Nrde2 RNA Sequencing Experiments "nrde-2 necessary for RNA interference, domain containing", Entrez_id: 217827 Study: Mouse Cell Types - transcriptomics data
Rbpjl RNA Sequencing Experiments recombination signal binding protein for immunoglobulin kappa J region-like, Entrez_id: 19668 Study: Mouse Cell Types - transcriptomics data
Grasp RNA Sequencing Experiments GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein, Entrez_id: 56149 Study: Mouse Cell Types - transcriptomics data
Xpot RNA Sequencing Experiments "exportin, tRNA (nuclear export receptor for tRNAs)", Entrez_id: 73192 Study: Mouse Cell Types - transcriptomics data
Cadps2 ISH: Mus musculus, Male, P56, coronal Ca2+-dependent activator protein for secretion 2, entrez_id: 320405, Experiment: 73817429, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Cadps2 ISH: Mus musculus, Male, P56, sagittal Ca2+-dependent activator protein for secretion 2, entrez_id: 320405, Experiment: 69540266, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
Rbpj ISH: Mus musculus, Male, P56, sagittal recombination signal binding protein for immunoglobulin kappa J region, entrez_id: 19664, Experiment: 69262324, C57BL/6J Studies: Developing Mouse Brain, Mouse Brain
viral tracer: Mus musculus, Female, P76, coronal Experiment: 504105304, C57BL/6J, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Cux2-IRES-Cre - Secondary motor area, MOs" Study: Connectivity projection mapping for cell type characterization
viral tracer: Mus musculus, Female, P75, coronal Experiment: 539641136, "Sst-IRES-Cre - Central amygdalar nucleus, CEA, GPi, SI" Study: Connectivity projection mapping for cell type characterization
viral tracer: Mus musculus, Male, P99, coronal Experiment: 647576768, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Rorb-IRES2-Cre-neo - Secondary motor area, MOs" Study: Connectivity projection mapping for cell type characterization
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 522255595, C57BL/6J, "tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Sst-IRES-Cre - Zona incerta, ZI, CA3, SSp-bfd, RT, LGv, CA2, SubG, CA1, SI" Study: Connectivity projection mapping for cell type characterization
viral tracer: Mus musculus, Male, P85, coronal Experiment: 503324388, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Nkx2-1-CreERT2 - Ventromedial hypothalamic nucleus, VMH, DMH, PH, TU, PMv" Study: Connectivity projection mapping for cell type characterization
viral tracer: Mus musculus, Female, P79, coronal Experiment: 552757477, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Syt6-Cre_KI148 - Secondary motor area, MOs" Study: Connectivity projection mapping for cell type characterization
viral tracer: Mus musculus, Male, P104, coronal Experiment: 616857128, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Glt25d2-Cre_NF107 - Secondary motor area, MOs" Study: Connectivity projection mapping for cell type characterization
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Ipcef1 RNA Sequencing Experiments

interaction protein for cytohesin exchange factors 1, Entrez_id: 320495

Study: Mouse Cell Types - transcriptomics data

Rmnd5b RNA Sequencing Experiments

required for meiotic nuclear division 5 homolog B (S. cerevisiae), Entrez_id: 66089

Study: Mouse Cell Types - transcriptomics data

Pkdrej RNA Sequencing Experiments

"polycystic kidney disease (polycystin) and REJ (sperm receptor for egg jelly homolog, sea urchin)", Entrez_id: 18766

Study: Mouse Cell Types - transcriptomics data

Phax RNA Sequencing Experiments

phosphorylated adaptor for RNA export, Entrez_id: 56698

Study: Mouse Cell Types - transcriptomics data

Ccs RNA Sequencing Experiments

copper chaperone for superoxide dismutase, Entrez_id: 12460

Study: Mouse Cell Types - transcriptomics data

Cadps2 RNA Sequencing Experiments

Ca2+-dependent activator protein for secretion 2, Entrez_id: 320405

Study: Mouse Cell Types - transcriptomics data

Nrde2 RNA Sequencing Experiments

"nrde-2 necessary for RNA interference, domain containing", Entrez_id: 217827

Study: Mouse Cell Types - transcriptomics data

Rbpjl RNA Sequencing Experiments

recombination signal binding protein for immunoglobulin kappa J region-like, Entrez_id: 19668

Study: Mouse Cell Types - transcriptomics data

Grasp RNA Sequencing Experiments

GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein, Entrez_id: 56149

Study: Mouse Cell Types - transcriptomics data

Xpot RNA Sequencing Experiments

"exportin, tRNA (nuclear export receptor for tRNAs)", Entrez_id: 73192

Study: Mouse Cell Types - transcriptomics data

Cadps2 ISH: Mus musculus, Male, P56, coronal

Ca2+-dependent activator protein for secretion 2, entrez_id: 320405, Experiment: 73817429, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Cadps2 ISH: Mus musculus, Male, P56, sagittal

Ca2+-dependent activator protein for secretion 2, entrez_id: 320405, Experiment: 69540266, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

Rbpj ISH: Mus musculus, Male, P56, sagittal

recombination signal binding protein for immunoglobulin kappa J region, entrez_id: 19664, Experiment: 69262324, C57BL/6J

Studies: Developing Mouse Brain, Mouse Brain

viral tracer: Mus musculus, Female, P76, coronal

Experiment: 504105304, C57BL/6J, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Cux2-IRES-Cre - Secondary motor area, MOs"

Study: Connectivity projection mapping for cell type characterization

viral tracer: Mus musculus, Female, P75, coronal

Experiment: 539641136, "Sst-IRES-Cre - Central amygdalar nucleus, CEA, GPi, SI"

Study: Connectivity projection mapping for cell type characterization

viral tracer: Mus musculus, Male, P99, coronal

Experiment: 647576768, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Rorb-IRES2-Cre-neo - Secondary motor area, MOs"

Study: Connectivity projection mapping for cell type characterization

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 522255595, C57BL/6J, "tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Sst-IRES-Cre - Zona incerta, ZI, CA3, SSp-bfd, RT, LGv, CA2, SubG, CA1, SI"

Study: Connectivity projection mapping for cell type characterization

viral tracer: Mus musculus, Male, P85, coronal

Experiment: 503324388, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Nkx2-1-CreERT2 - Ventromedial hypothalamic nucleus, VMH, DMH, PH, TU, PMv"

Study: Connectivity projection mapping for cell type characterization

viral tracer: Mus musculus, Female, P79, coronal

Experiment: 552757477, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Syt6-Cre_KI148 - Secondary motor area, MOs"

Study: Connectivity projection mapping for cell type characterization

viral tracer: Mus musculus, Male, P104, coronal

Experiment: 616857128, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Glt25d2-Cre_NF107 - Secondary motor area, MOs"

Study: Connectivity projection mapping for cell type characterization

	Prenatal (66)
	Juvenile (136)
	Adult (3110)
	Aged (739)

	ISH (3690)
	Microarray (70)
	RNA Sequencing (89)
	Resource (36)
	viral tracer (47)

	Aging Dementia TBI - non-ISH data (27)
	Connectivity projection mapping for cell type characterization (57)
	Developing Human Brain ISH (3)
	Developing Human Prenatal LMD Microarray (23)
	Developing Human Reference Data (3)
	Developing Human Transcriptome (24)
	Developing Mouse Brain (20)
	Developing Mouse Brain Reference Data (1)
	Glioblastoma (2689)
	Human Brain Microarray (26)
	Human Glioblastoma RNASeq (22)
	Mouse Brain (26)
	Mouse Brain Reference Data (1)
	Mouse Cell Types (8)
	Mouse Cell Types - transcriptomics data (17)
	Mouse Spinal Cord (33)
	Mouse Spinal Cord Reference Data (2)
	Mouse Strains (2)
	Non-Human Primate ISH (4)
	Non-Human Primate Macrodissection Microarray (13)
	Non-Human Primate Microdissection Microarray (14)
	Sleep (1035)

	Asian (45)
	Black or African American (67)
	European (23)
	Hispanic (45)
	Two or more races (23)
	White or Caucasian (67)

	Dorsal to Ventral (370)
	Lateral to Medial (442)
	Medial to Lateral (633)
	Ventral to Dorsal (799)
	coronal (70)
	sagittal (1045)
	variable (150)

	frontal lobe (851)
	occipital lobe (128)
	parietal lobe (1002)
	temporal lobe (707)

	Human (2817)
	Mouse (1199)
	NHP (31)

	Female (1196)
	Male (2850)

	control (80)
	glioblastoma (796)

	Passed QC (4045)
	Failed QC (2)