Allen Brain Atlas

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viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 167654019, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Slc17a6-IRES-Cre - Postsubiculum, POST, PRE, APr, VISp, PAR" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 267396430, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Avp-IRES2-Cre - Lateral hypothalamic area, LHA, TU" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 156314054, B6.C3H, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Scnn1a-Tg3-Cre - Postsubiculum, POST, APr, PRE, VISp" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 294356216, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Tac1-IRES2-Cre - Parabrachial nucleus, PB, CENT, MV" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 179644545, B6.FVB(ICR), "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Grp-Cre_KH288 - Field CA3, CA3" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 287995180, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Ntrk1-IRES-Cre - Caudoputamen, CP" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 160079360, B6.FVB, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Pomc-Cre_BL - Dentate gyrus, DG, CA3" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 12 wks, coronal Experiment: 156314762, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Th-IRES-CreER - Ventral tegmental area, VTA, IF, CLI, PN" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 183104511, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Crh-IRES-Cre_BL - Anterior cingulate area, dorsal part, ACAd, MOs" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 300927483, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Tac2-IRES2-Cre - Posterior hypothalamic nucleus, PH, LHA, DMH, PMd, PMv, VM" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 301016900, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Adcyap1-2A-Cre - Parabrachial nucleus, PB, SUT, V, PSV, I5, P5, PARN, MV" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 278180500, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Crh-IRES-Cre_BL - Sublaterodorsal nucleus, SLD, PCG, B, SLC, PRNc, MRN" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 263106751, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Ntrk1-IRES-Cre - Paraventricular nucleus of the thalamus, PVT, MD, IMD" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 306491185, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Adcyap1-2A-Cre - Retrosplenial area, ventral part, RSPv, RSPd, LH, MH, DG" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 12 wks, coronal Experiment: 177460028, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Chat-IRES-Cre-neo - Oculomotor nucleus, III, IV, Pa4, MRN, PAG, RL, EW" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 183057424, B6.FVB(ICR), "tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Grp-Cre_KH288 - Central medial nucleus of the thalamus, CM, MD, PCN, IMD" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 181786681, B6.FVB, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Sim1-Cre_KJ18 - Bed nuclei of the stria terminalis, BST, MPO, PVH, PD, MPN" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P75, coronal Experiment: 127090378, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Reticular nucleus of the thalamus, RT, VPM, VPL, VAL, PO" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 164986046, B6.FVB, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Sim1-Cre_KJ18 - Posterior hypothalamic nucleus, PH, SUM, PAG, SPFm, MM, SPA, LHA" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 177322838, B6.FVB, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm)", "Nr5a1-Cre - Primary somatosensory area, nose, SSp-n, SSs" Study: Mouse Connectivity Projection
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viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 167654019, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Slc17a6-IRES-Cre - Postsubiculum, POST, PRE, APr, VISp, PAR"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 267396430, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Avp-IRES2-Cre - Lateral hypothalamic area, LHA, TU"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 156314054, B6.C3H, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Scnn1a-Tg3-Cre - Postsubiculum, POST, APr, PRE, VISp"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 294356216, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Tac1-IRES2-Cre - Parabrachial nucleus, PB, CENT, MV"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 179644545, B6.FVB(ICR), "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Grp-Cre_KH288 - Field CA3, CA3"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 287995180, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Ntrk1-IRES-Cre - Caudoputamen, CP"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 160079360, B6.FVB, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Pomc-Cre_BL - Dentate gyrus, DG, CA3"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 12 wks, coronal

Experiment: 156314762, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Th-IRES-CreER - Ventral tegmental area, VTA, IF, CLI, PN"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 183104511, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Crh-IRES-Cre_BL - Anterior cingulate area, dorsal part, ACAd, MOs"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 300927483, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Tac2-IRES2-Cre - Posterior hypothalamic nucleus, PH, LHA, DMH, PMd, PMv, VM"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 301016900, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Adcyap1-2A-Cre - Parabrachial nucleus, PB, SUT, V, PSV, I5, P5, PARN, MV"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 278180500, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Crh-IRES-Cre_BL - Sublaterodorsal nucleus, SLD, PCG, B, SLC, PRNc, MRN"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 263106751, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Ntrk1-IRES-Cre - Paraventricular nucleus of the thalamus, PVT, MD, IMD"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 306491185, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Adcyap1-2A-Cre - Retrosplenial area, ventral part, RSPv, RSPd, LH, MH, DG"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 12 wks, coronal

Experiment: 177460028, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Chat-IRES-Cre-neo - Oculomotor nucleus, III, IV, Pa4, MRN, PAG, RL, EW"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 183057424, B6.FVB(ICR), "tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Grp-Cre_KH288 - Central medial nucleus of the thalamus, CM, MD, PCN, IMD"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 181786681, B6.FVB, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Sim1-Cre_KJ18 - Bed nuclei of the stria terminalis, BST, MPO, PVH, PD, MPN"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P75, coronal

Experiment: 127090378, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Reticular nucleus of the thalamus, RT, VPM, VPL, VAL, PO"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 164986046, B6.FVB, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Sim1-Cre_KJ18 - Posterior hypothalamic nucleus, PH, SUM, PAG, SPFm, MM, SPA, LHA"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 177322838, B6.FVB, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm)", "Nr5a1-Cre - Primary somatosensory area, nose, SSp-n, SSs"

Study: Mouse Connectivity Projection

	Prenatal (27)
	Juvenile (225)
	Adult (828)
	Aged (10)

	FISH (104)
	ISH (450)
	Microarray (24)
	RNA Sequencing (31)
	XFP (6)
	viral tracer (462)

	Aging Dementia TBI - non-ISH data (10)
	Developing Human Prenatal LMD Microarray (7)
	Developing Human Transcriptome (5)
	Developing Mouse Brain (21)
	Glioblastoma (9)
	Human Brain Microarray (7)
	Human Glioblastoma RNASeq (8)
	Mouse Brain (13)
	Mouse Cell Types - transcriptomics data (8)
	Mouse Connectivity Projection (438)
	Mouse Connectivity Transgenic Characterization (512)
	Mouse Connectivity anterograde Cre-defined EGFP (12)
	Mouse Connectivity anterograde Cre-defined SypEGFP (11)
	Mouse Spinal Cord (10)
	Non-Human Primate Macrodissection Microarray (5)
	Non-Human Primate Microdissection Microarray (5)
	Transgenic Characterization - serial two-photon tomography (1)

	B6.129 (700)
	B6.129.FVB (44)
	B6.C3H (61)
	B6.FVB (114)
	B6.FVB(ICR) (51)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (40)

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	Two or more races (5)
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	Dorsal to Ventral (1)
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	Ventral to Dorsal (2)
	coronal (764)
	sagittal (240)
	variable (11)

	Brain (512)
	frontal lobe (4)
	parietal lobe (3)
	temporal lobe (1)

	Human (46)
	Mouse (1022)
	NHP (10)

	Female (450)
	Male (636)

	control (24)
	glioblastoma (16)

	Passed QC (1041)
	Failed QC (37)