Allen Brain Atlas

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Differential gene expression search in dorsolateral prefrontal cortex (Area 9 and 46) NIH Blueprint NHP Atlas differential gene expression search in dorsolateral prefrontal cortex (Area 9 and 46) Study: Non-Human Primate Microdissection Microarray
Gene list for NIH Blueprint NHP Atlas A complete list of genes that was used for this project and the corresponding anatomical structure(s) with ISH data available Study: Non-Human Primate ISH
Anatomic Search Detailed description of Expert Annotation and Anatomic Search functionalities Study: Non-Human Primate ISH
Acknowledgements for the NIH Blueprint NHP Atlas The many people and organizations who have contributed to this project Study: Non-Human Primate ISH
Allen Mouse Spinal Cord Reference Atlas atlases for the postnatal day 4 (P4) and day 56 (P56) C57Bl/6J male mouse Study: Mouse Spinal Cord Reference Data
Acknowledgements for the Ivy Glioblastoma Atlas Project Technical white paper listing the investigators and scientific advisors. Study: Glioblastoma
Informatics Data Processing Design and implementation of the Informatics Data Pipeline (IDP) Study: Sleep
Data Production Processes Processes and procedures used to perform ISH Study: Sleep
Visualization of Changes in Gene Expression using Brain Explorer Generation and use of difference grid files Study: Sleep
Cell Specimen 464198958 "Postrhinal area, layer 5", right hemisphere, Male, P53, Mus musculus, Sst-IRES-Cre Study: Mouse Cell Types
Cell Specimen 464212183 "Primary visual area, layer 5", left hemisphere, Male, P53, Mus musculus, Sst-IRES-Cre Study: Mouse Cell Types
Cell Specimen 313861608 "Primary visual area, layer 5", right hemisphere, Male, P56, Mus musculus, Pvalb-IRES-Cre Study: Mouse Cell Types
Cell Specimen 313861677 "Primary visual area, layer 4", left hemisphere, Male, P54, Mus musculus, Rorb-IRES2-Cre Study: Mouse Cell Types
Cell Specimen 313861794 "Lateral visual area, layer 4", left hemisphere, Male, P53, Mus musculus, Scnn1a-Tg3-Cre Study: Mouse Cell Types
Cell Specimen 313861828 "Primary visual area, layer 4", left hemisphere, Male, P53, Mus musculus, Scnn1a-Tg3-Cre Study: Mouse Cell Types
Cell Specimen 313862134 "Primary visual area, layer 5", left hemisphere, Female, P48, Mus musculus, Sst-IRES-Cre Study: Mouse Cell Types
Cell Specimen 313862167 "Lateral visual area, layer 4", right hemisphere, Female, P48, Mus musculus, Sst-IRES-Cre Study: Mouse Cell Types
Cell Specimen 313862274 "Primary visual area, layer 2/3", right hemisphere, Female, P49, Mus musculus, Sst-IRES-Cre Study: Mouse Cell Types
Cell Specimen 313860745 "Primary visual area, layer 5", left hemisphere, Female, P48, Mus musculus, Rorb-IRES2-Cre Study: Mouse Cell Types
Cell Specimen 314529406 "Primary visual area, layer 4", left hemisphere, Male, P52, Mus musculus, Rorb-IRES2-Cre Study: Mouse Cell Types
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Differential gene expression search in dorsolateral prefrontal cortex (Area 9 and 46)

NIH Blueprint NHP Atlas differential gene expression search in dorsolateral prefrontal cortex (Area 9 and 46)

Study: Non-Human Primate Microdissection Microarray

A complete list of genes that was used for this project and the corresponding anatomical structure(s) with ISH data available

Study: Non-Human Primate ISH

Anatomic Search

Detailed description of Expert Annotation and Anatomic Search functionalities

Study: Non-Human Primate ISH

Acknowledgements for the NIH Blueprint NHP Atlas

The many people and organizations who have contributed to this project

Study: Non-Human Primate ISH

Allen Mouse Spinal Cord Reference Atlas

atlases for the postnatal day 4 (P4) and day 56 (P56) C57Bl/6J male mouse

Study: Mouse Spinal Cord Reference Data

Acknowledgements for the Ivy Glioblastoma Atlas Project

Technical white paper listing the investigators and scientific advisors.

Study: Glioblastoma

Informatics Data Processing

Design and implementation of the Informatics Data Pipeline (IDP)

Study: Sleep

Data Production Processes

Processes and procedures used to perform ISH

Study: Sleep

Visualization of Changes in Gene Expression using Brain Explorer

Generation and use of difference grid files

Study: Sleep

Cell Specimen 464198958

"Postrhinal area, layer 5", right hemisphere, Male, P53, Mus musculus, Sst-IRES-Cre

Study: Mouse Cell Types

Cell Specimen 464212183

"Primary visual area, layer 5", left hemisphere, Male, P53, Mus musculus, Sst-IRES-Cre

Study: Mouse Cell Types

Cell Specimen 313861608

"Primary visual area, layer 5", right hemisphere, Male, P56, Mus musculus, Pvalb-IRES-Cre

Study: Mouse Cell Types

Cell Specimen 313861677

"Primary visual area, layer 4", left hemisphere, Male, P54, Mus musculus, Rorb-IRES2-Cre

Study: Mouse Cell Types

Cell Specimen 313861794

"Lateral visual area, layer 4", left hemisphere, Male, P53, Mus musculus, Scnn1a-Tg3-Cre

Study: Mouse Cell Types

Cell Specimen 313861828

"Primary visual area, layer 4", left hemisphere, Male, P53, Mus musculus, Scnn1a-Tg3-Cre

Study: Mouse Cell Types

Cell Specimen 313862134

"Primary visual area, layer 5", left hemisphere, Female, P48, Mus musculus, Sst-IRES-Cre

Study: Mouse Cell Types

Cell Specimen 313862167

"Lateral visual area, layer 4", right hemisphere, Female, P48, Mus musculus, Sst-IRES-Cre

Study: Mouse Cell Types

Cell Specimen 313862274

"Primary visual area, layer 2/3", right hemisphere, Female, P49, Mus musculus, Sst-IRES-Cre

Study: Mouse Cell Types

Cell Specimen 313860745

"Primary visual area, layer 5", left hemisphere, Female, P48, Mus musculus, Rorb-IRES2-Cre

Study: Mouse Cell Types

Cell Specimen 314529406

"Primary visual area, layer 4", left hemisphere, Male, P52, Mus musculus, Rorb-IRES2-Cre

Study: Mouse Cell Types

	Prenatal (69133)
	Juvenile (90265)
	Adult (57860)
	Aged (2667)

	Electrophysiology (1226)
	FISH (58)
	ISH (11173)
	Microarray (32394)
	RNA Sequencing (104394)
	Resource (16)
	XFP (1)

	Aging Dementia TBI - ISH data (1576)
	Aging Dementia TBI - non-ISH data (50281)
	Developing Human Brain ISH (1028)
	Developing Human Prenatal LMD Microarray (838)
	Developing Human Reference Data (19)
	Developing Human Transcriptome (52394)
	Developing Mouse Brain (2953)
	Developing Mouse Brain Reference Data (1)
	Glioblastoma (1308)
	Human Brain ISH Autism Study (279)
	Human Brain ISH Cortex Study (164)
	Human Brain ISH Neurotransmitter Study (81)
	Human Brain ISH Schizophrenia Study (108)
	Human Brain ISH SubCortex Study (8)
	Human Brain Microarray (823)
	Human Cell Types (182)
	Human Glioblastoma RNASeq (915)
	Mouse Brain (1151)
	Mouse Brain Reference Data (1)
	Mouse Cell Types (1052)
	Mouse Cell Types - transcriptomics data (875)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (299)
	Mouse Spinal Cord (1476)
	Mouse Spinal Cord Reference Data (1)
	Non-Human Primate ISH (1383)
	Non-Human Primate Macrodissection Microarray (15377)
	Non-Human Primate Microdissection Microarray (15378)
	Non-Human Primate Molecular Map (133)
	Sleep (68)

	129/SvJ (4)
	American Indian and Alaska Native (8)
	B6.129 (60)
	B6.129.FVB (12)
	B6.C3H (4)
	B6.FVB (5)
	B6.FVB(ICR) (6)
	C57BL/6J (5577)
	FVB (6)
	FVB.CD1(ICR) (7)
	FVB/NJ (4)
	Non-Hispanic (22)

	Asian (53243)
	Black or African American (54713)
	European (52376)
	Hispanic (53329)
	Two or more races (52376)
	White or Caucasian (54550)

	Coronal (Caudal to Rostral) (116)
	Dorsal to Ventral (70)
	Lateral to Medial (157)
	Medial to Lateral (193)
	Ventral to Dorsal (290)
	coronal (4759)
	sagittal (3915)
	variable (1919)

	autism (171)
	control (71638)
	glioblastoma (1202)
	schizophrenia (40)
	traumatic brain injury (762)

	Amygdala/Hippocampus (312)
	Anterior area layer 4 (1)
	Anterior area layer 6b (1)
	Anterolateral visual area layer 2/3 (3)
	Anterolateral visual area layer 5 (3)
	Anterolateral visual area layer 6b (1)
	Anteromedial visual area layer 4 (1)
	Anteromedial visual area layer 5 (1)
	Brain (429)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (19)
	Claustrum/Insula (9)
	Dorsolateral prefrontal cortex (305)
	Frontal Cortex (24)
	Lateral visual area layer 1 (2)
	Lateral visual area layer 2/3 (4)
	Lateral visual area layer 4 (12)
	Lateral visual area layer 5 (15)
	Lateral visual area layer 6a (12)
	Lateral visual area layer 6b (2)
	Laterointermediate area layer 2/3 (2)
	Laterointermediate area layer 4 (1)
	Laterointermediate area layer 5 (1)
	Laterointermediate area layer 6a (3)
	Parieto-Occipital Cortex (13)
	Posterior Superior Temporal Cortex (37)
	Posterolateral visual area layer 5 (2)
	Posterolateral visual area layer 6b (7)
	Postrhinal area layer 2/3 (1)
	Postrhinal area layer 5 (6)
	Postrhinal area layer 6a (4)
	Postrhinal area layer 6b (1)
	Primary somatosensory area barrel field layer 5 (1)
	Primary somatosensory area trunk layer 4 (1)
	Primary visual area layer 1 (25)
	Primary visual area layer 2/3 (175)
	Primary visual area layer 4 (272)
	Primary visual area layer 5 (266)
	Primary visual area layer 6a (117)
	Primary visual area layer 6b (22)
	Retrosplenial area dorsal part layer 2/3 (2)
	Retrosplenial area dorsal part layer 5 (5)
	Retrosplenial area dorsal part layer 6a (6)
	Retrosplenial area lateral agranular part layer 2/3 (2)
	Retrosplenial area lateral agranular part layer 5 (4)
	Retrosplenial area lateral agranular part layer 6a (2)
	Retrosplenial area ventral part layer 5 (1)
	Retrosplenial area ventral part layer 6a (1)
	Rostrolateral area layer 2/3 (1)
	SubCortex (16)
	Temporal association areas layer 4 (1)
	Temporal cortex (86)
	Ventral Anterior Cingulate (20)
	Ventral striatum (166)
	Visual Cortex (162)
	Visual cortex (103)
	amygdaloid complex (153)
	angular gyrus (4)
	brain (165)
	frontal lobe (291)
	hippocampal cortex (hippocampal formation) (153)
	hippocampus (hippocampal formation) (522)
	inferior frontal gyrus (2)
	inferior temporal gyrus (8)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (157)
	middle frontal gyrus (22)
	middle temporal gyrus (134)
	occipital cortex (153)
	occipital lobe (34)
	parietal lobe (301)
	parietal neocortex (498)
	posteromedial visual area layer 1 (4)
	posteromedial visual area layer 2/3 (19)
	posteromedial visual area layer 4 (11)
	posteromedial visual area layer 5 (16)
	posteromedial visual area layer 6a (3)
	posteromedial visual area layer 6b (1)
	temporal lobe (213)
	temporal neocortex (550)
	ventral striatum (180)

	Human (109891)
	Mouse (7746)
	NHP (32138)

	Female (72584)
	Male (95598)

	Passed QC (149575)
	Failed QC (200)