Allen Brain Atlas

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Differential gene expression search in Thalamus Adult Mouse Brain differential gene expression search in Thalamus Study: Mouse Brain
Differential gene expression search in Reticular nucleus of the thalamus Adult Mouse Brain differential gene expression search in Reticular nucleus of the thalamus Study: Mouse Brain
Differential gene expression search in Epithalamus Adult Mouse Brain differential gene expression search in Epithalamus Study: Mouse Brain
Differential gene expression search in Hypothalamus Adult Mouse Brain differential gene expression search in Hypothalamus Study: Mouse Brain
Differential gene expression search in Midbrain Adult Mouse Brain differential gene expression search in Midbrain Study: Mouse Brain
Differential gene expression search in Periaqueductal gray Adult Mouse Brain differential gene expression search in Periaqueductal gray Study: Mouse Brain
Differential gene expression search in Pons Adult Mouse Brain differential gene expression search in Pons Study: Mouse Brain
Differential gene expression search in Medulla Adult Mouse Brain differential gene expression search in Medulla Study: Mouse Brain
Differential gene expression search in Inferior olivary complex Adult Mouse Brain differential gene expression search in Inferior olivary complex Study: Mouse Brain
Brain Explorer for the Adult Mouse Brain desktop application for viewing gene expression data in 3D Study: Mouse Brain
In Situ Hybridization Overview of methods for ISH studies. Study: Human Brain Microarray
Gene List A complete list of genes characterized by ISH in adult human brain studies Study: Human Brain Microarray
Brain Explorer desktop application for viewing gene expression data in 3D Study: Human Brain Microarray
Brain Explorer for the Developing Mouse Brain desktop application for viewing gene expression data in 3D Study: Developing Mouse Brain
Overview of methods for BrainSpan ISH Overview of methods for In Situ Hybridization studies Study: Developing Human Brain ISH
Transgenic Characterization Technical white paper describing various transgenic characterization studies. Study: Mouse Connectivity Transgenic Characterization
Resources A complete list of driver or reporter mice and virus used in this study. Study: Mouse Connectivity Transgenic Characterization
Differential gene expression search in medial prefrontal cortex NIH Blueprint NHP Atlas differential gene expression search in medial prefrontal cortex Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in dorsolateral prefrontal cortex (Area 9 and 46) NIH Blueprint NHP Atlas differential gene expression search in dorsolateral prefrontal cortex (Area 9 and 46) Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in Visual Cortex NIH Blueprint NHP Atlas differential gene expression search in Visual Cortex Study: Non-Human Primate Microdissection Microarray
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Differential gene expression search in Thalamus

Adult Mouse Brain differential gene expression search in Thalamus

Study: Mouse Brain

Differential gene expression search in Reticular nucleus of the thalamus

Adult Mouse Brain differential gene expression search in Reticular nucleus of the thalamus

Study: Mouse Brain

Differential gene expression search in Epithalamus

Adult Mouse Brain differential gene expression search in Epithalamus

Study: Mouse Brain

Differential gene expression search in Hypothalamus

Adult Mouse Brain differential gene expression search in Hypothalamus

Study: Mouse Brain

Differential gene expression search in Midbrain

Adult Mouse Brain differential gene expression search in Midbrain

Study: Mouse Brain

Differential gene expression search in Periaqueductal gray

Adult Mouse Brain differential gene expression search in Periaqueductal gray

Study: Mouse Brain

Differential gene expression search in Pons

Adult Mouse Brain differential gene expression search in Pons

Study: Mouse Brain

Differential gene expression search in Medulla

Adult Mouse Brain differential gene expression search in Medulla

Study: Mouse Brain

Differential gene expression search in Inferior olivary complex

Adult Mouse Brain differential gene expression search in Inferior olivary complex

Study: Mouse Brain

Brain Explorer for the Adult Mouse Brain

desktop application for viewing gene expression data in 3D

Study: Mouse Brain

In Situ Hybridization

Overview of methods for ISH studies.

Study: Human Brain Microarray

Gene List

A complete list of genes characterized by ISH in adult human brain studies

Study: Human Brain Microarray

Brain Explorer

desktop application for viewing gene expression data in 3D

Study: Human Brain Microarray

Brain Explorer for the Developing Mouse Brain

desktop application for viewing gene expression data in 3D

Study: Developing Mouse Brain

Overview of methods for BrainSpan ISH

Overview of methods for In Situ Hybridization studies

Study: Developing Human Brain ISH

Transgenic Characterization

Technical white paper describing various transgenic characterization studies.

Study: Mouse Connectivity Transgenic Characterization

Resources

A complete list of driver or reporter mice and virus used in this study.

Study: Mouse Connectivity Transgenic Characterization

Differential gene expression search in medial prefrontal cortex

NIH Blueprint NHP Atlas differential gene expression search in medial prefrontal cortex

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in dorsolateral prefrontal cortex (Area 9 and 46)

NIH Blueprint NHP Atlas differential gene expression search in dorsolateral prefrontal cortex (Area 9 and 46)

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in Visual Cortex

NIH Blueprint NHP Atlas differential gene expression search in Visual Cortex

Study: Non-Human Primate Microdissection Microarray

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)