Allen Brain Atlas

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viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 287044088, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, IR, Power, (W)", "Avp-IRES2-Cre - Paraventricular hypothalamic nucleus, PVH, PVHd, DMH, AHN, ZI, PR, RE" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 204832205, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Adcyap1-2A-Cre - Nucleus of reuniens, RE, AM, PR, RT, ZI, PVH, PT, VM, IAD, PVHd" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 277958616, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Pvalb-IRES-Cre - Ventral posteromedial nucleus of the thalamus, VPM, RT, VPL, VPMpc, PO, VAL, VPLpc, VM, PCN, GPi" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 167213641, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Crh-IRES-Cre_BL - Dorsal cochlear nucleus, DCO, y, LAV, IP" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, P83, coronal Experiment: 307743960, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Nxph4-T2A-CreERT2 - Parabrachial nucleus, PB, CENT, LC, MEV, FN, PCG, LDT" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 307692311, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Chat-IRES-Cre-neo - Caudoputamen, CP" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 278315824, B6.129, "tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", Failed QC, "Cux2-IRES-Cre - Supplemental somatosensory area, SSp-bfd, SSs" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 159375036, B6.FVB, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Sim1-Cre_KJ18 - Bed nuclei of the stria terminalis, BST, AM, PT, IAD, RT" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 304857992, B6.FVB(ICR), "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, IR, Power, (W), tissuecyte, PMT, (V)", "Chrna2-Cre_OE25 - Inferior colliculus, IC" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 265287564, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Tac2-IRES2-Cre - Medial habenula, MH, PVT, LH" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 184073678, B6.C3H, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Scnn1a-Tg3-Cre - Rostrolateral visual area, VISrl, VISp, SSp-bfd" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 12 wks, coronal Experiment: 264249312, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Esr1-2A-Cre - Retrosplenial area, lateral agranular part, RSPagl, SSp-tr" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 12 wks, coronal Experiment: 304947804, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Nos1-CreERT2 - Supramammillary nucleus, SUM, PH, IPN, MM, VTA" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 170784358, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Crh-IRES-Cre_BL - Nucleus of reuniens, RE, PVH, PR, VAL, AM, Xi, VM, PVHd" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 113780276, B6.FVB, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Pomc-Cre_ST - Dentate gyrus, DG" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 287769992, B6.C3H, "tissuecyte, ImageDepth, (um), tissuecyte, IR, Power, (W), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Scnn1a-Tg3-Cre - Entorhinal area, lateral part, ENTl, ENTm" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 178488152, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Oxt-IRES-Cre - Supraoptic nucleus, SO" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 155735108, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Pnmt-Cre - Nucleus of the solitary tract, NTS, DMX, MDRN, MDRNd, GR, CU, XII" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 176901480, B6.FVB, "Nr5a1-Cre - Primary visual area, VISp" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 159996191, B6.FVB, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Pomc-Cre_BL - Dentate gyrus, DG, CA1" Study: Mouse Connectivity Projection
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viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 287044088, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, IR, Power, (W)", "Avp-IRES2-Cre - Paraventricular hypothalamic nucleus, PVH, PVHd, DMH, AHN, ZI, PR, RE"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 204832205, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Adcyap1-2A-Cre - Nucleus of reuniens, RE, AM, PR, RT, ZI, PVH, PT, VM, IAD, PVHd"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 277958616, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Pvalb-IRES-Cre - Ventral posteromedial nucleus of the thalamus, VPM, RT, VPL, VPMpc, PO, VAL, VPLpc, VM, PCN, GPi"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 167213641, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Crh-IRES-Cre_BL - Dorsal cochlear nucleus, DCO, y, LAV, IP"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, P83, coronal

Experiment: 307743960, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Nxph4-T2A-CreERT2 - Parabrachial nucleus, PB, CENT, LC, MEV, FN, PCG, LDT"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 307692311, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Chat-IRES-Cre-neo - Caudoputamen, CP"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 278315824, B6.129, "tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", Failed QC, "Cux2-IRES-Cre - Supplemental somatosensory area, SSp-bfd, SSs"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 159375036, B6.FVB, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Sim1-Cre_KJ18 - Bed nuclei of the stria terminalis, BST, AM, PT, IAD, RT"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 304857992, B6.FVB(ICR), "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, IR, Power, (W), tissuecyte, PMT, (V)", "Chrna2-Cre_OE25 - Inferior colliculus, IC"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 265287564, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Tac2-IRES2-Cre - Medial habenula, MH, PVT, LH"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 184073678, B6.C3H, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Scnn1a-Tg3-Cre - Rostrolateral visual area, VISrl, VISp, SSp-bfd"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 12 wks, coronal

Experiment: 264249312, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Esr1-2A-Cre - Retrosplenial area, lateral agranular part, RSPagl, SSp-tr"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 12 wks, coronal

Experiment: 304947804, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Nos1-CreERT2 - Supramammillary nucleus, SUM, PH, IPN, MM, VTA"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 170784358, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Crh-IRES-Cre_BL - Nucleus of reuniens, RE, PVH, PR, VAL, AM, Xi, VM, PVHd"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 113780276, B6.FVB, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Pomc-Cre_ST - Dentate gyrus, DG"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 287769992, B6.C3H, "tissuecyte, ImageDepth, (um), tissuecyte, IR, Power, (W), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Scnn1a-Tg3-Cre - Entorhinal area, lateral part, ENTl, ENTm"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 178488152, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Oxt-IRES-Cre - Supraoptic nucleus, SO"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 155735108, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Pnmt-Cre - Nucleus of the solitary tract, NTS, DMX, MDRN, MDRNd, GR, CU, XII"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 176901480, B6.FVB, "Nr5a1-Cre - Primary visual area, VISp"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 159996191, B6.FVB, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Pomc-Cre_BL - Dentate gyrus, DG, CA1"

Study: Mouse Connectivity Projection

	Prenatal (27)
	Juvenile (225)
	Adult (828)
	Aged (10)

	FISH (104)
	ISH (450)
	Microarray (24)
	RNA Sequencing (31)
	XFP (6)
	viral tracer (462)

	Aging Dementia TBI - non-ISH data (10)
	Developing Human Prenatal LMD Microarray (7)
	Developing Human Transcriptome (5)
	Developing Mouse Brain (21)
	Glioblastoma (9)
	Human Brain Microarray (7)
	Human Glioblastoma RNASeq (8)
	Mouse Brain (13)
	Mouse Cell Types - transcriptomics data (8)
	Mouse Connectivity Projection (438)
	Mouse Connectivity Transgenic Characterization (512)
	Mouse Connectivity anterograde Cre-defined EGFP (12)
	Mouse Connectivity anterograde Cre-defined SypEGFP (11)
	Mouse Spinal Cord (10)
	Non-Human Primate Macrodissection Microarray (5)
	Non-Human Primate Microdissection Microarray (5)
	Transgenic Characterization - serial two-photon tomography (1)

	B6.129 (700)
	B6.129.FVB (44)
	B6.C3H (61)
	B6.FVB (114)
	B6.FVB(ICR) (51)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (40)

	Asian (12)
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	Two or more races (5)
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	Dorsal to Ventral (1)
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	Ventral to Dorsal (2)
	coronal (764)
	sagittal (240)
	variable (11)

	Brain (512)
	frontal lobe (4)
	parietal lobe (3)
	temporal lobe (1)

	Human (46)
	Mouse (1022)
	NHP (10)

	Female (450)
	Male (636)

	control (24)
	glioblastoma (16)

	Passed QC (1041)
	Failed QC (37)