Allen Brain Atlas

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viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 286556914, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Slc17a6-IRES-Cre - Dorsal cochlear nucleus, DCO, VCO" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 266489212, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Slc32a1-IRES-Cre - Ventromedial hypothalamic nucleus, VMH, ARH, PVi, DMH, AHN, RCH, SBPV" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 301539438, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, IR, Power, (W), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Zona incerta, ZI" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 146983504, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Oxt-IRES-Cre - Paraventricular hypothalamic nucleus, PVH, PVHd, SBPV" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 160317628, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Lepr-IRES-Cre - Dorsomedial nucleus of the hypothalamus, DMH, PH, LHA" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 304337288, B6.FVB, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Th-Cre_FI172 - Ventral tegmental area, VTA, MRN, RN, PAG" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 156819600, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Chat-IRES-Cre-neo - Medial septal nucleus, MS, LSr, LSv, SF" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P83, coronal Experiment: 552284594, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Adcyap1-2A-Cre - Parabrachial nucleus, PB, MV, SUV, LAV, SUT, y" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P80, coronal Experiment: 301327022, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Nos1-CreERT2 - Dentate gyrus, DG, CA1, CA3" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 305425490, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Slc17a6-IRES-Cre - Lateral dorsal nucleus of thalamus, LD, PO, LP, VPL" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P83, coronal Experiment: 301991007, B6.129, "tissuecyte, PMT, (V), tissuecyte, IR, Power, (W), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Nxph4-T2A-CreERT2 - Parabrachial nucleus, PB, CENT, LC, MEV, PCG, LDT, PAG, MV" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 268040381, B6.C3H, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Scnn1a-Tg3-Cre - Primary visual area, VISp, VISpm" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 287666431, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Avp-IRES2-Cre - Medial amygdalar nucleus, MEA, SO" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 159151138, B6.FVB, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Sim1-Cre_KJ18 - Nucleus of the lateral olfactory tract, NLOT, MEA, BMA, COAa, AAA" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 166268376, B6.C3H, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Scnn1a-Tg3-Cre - Primary auditory area, AUDp, AUDd" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 264321572, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Chat-IRES-Cre-neo - Intermediate reticular nucleus, IRN, AMB, PGRNl, MDRN, MDRNd" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 179640955, B6.C3H, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Scnn1a-Tg3-Cre - Primary motor area, MOp, SSp-ll" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 305449231, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Slc17a6-IRES-Cre - Parataenial nucleus, PT, PVT, RE" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 266500714, B6.FVB, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Th-Cre_FI172 - Periaqueductal gray, PAG, DR, CLI, IV, MRN" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 267930978, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Nos1-CreERT2 - Secondary motor area, MOs, ACAd" Study: Mouse Connectivity Projection
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viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 286556914, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Slc17a6-IRES-Cre - Dorsal cochlear nucleus, DCO, VCO"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 266489212, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Slc32a1-IRES-Cre - Ventromedial hypothalamic nucleus, VMH, ARH, PVi, DMH, AHN, RCH, SBPV"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 301539438, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, IR, Power, (W), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Zona incerta, ZI"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 146983504, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Oxt-IRES-Cre - Paraventricular hypothalamic nucleus, PVH, PVHd, SBPV"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 160317628, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Lepr-IRES-Cre - Dorsomedial nucleus of the hypothalamus, DMH, PH, LHA"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 304337288, B6.FVB, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Th-Cre_FI172 - Ventral tegmental area, VTA, MRN, RN, PAG"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 156819600, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Chat-IRES-Cre-neo - Medial septal nucleus, MS, LSr, LSv, SF"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P83, coronal

Experiment: 552284594, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Adcyap1-2A-Cre - Parabrachial nucleus, PB, MV, SUV, LAV, SUT, y"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P80, coronal

Experiment: 301327022, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Nos1-CreERT2 - Dentate gyrus, DG, CA1, CA3"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 305425490, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Slc17a6-IRES-Cre - Lateral dorsal nucleus of thalamus, LD, PO, LP, VPL"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P83, coronal

Experiment: 301991007, B6.129, "tissuecyte, PMT, (V), tissuecyte, IR, Power, (W), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Nxph4-T2A-CreERT2 - Parabrachial nucleus, PB, CENT, LC, MEV, PCG, LDT, PAG, MV"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 268040381, B6.C3H, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Scnn1a-Tg3-Cre - Primary visual area, VISp, VISpm"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 287666431, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Avp-IRES2-Cre - Medial amygdalar nucleus, MEA, SO"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 159151138, B6.FVB, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Sim1-Cre_KJ18 - Nucleus of the lateral olfactory tract, NLOT, MEA, BMA, COAa, AAA"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 166268376, B6.C3H, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Scnn1a-Tg3-Cre - Primary auditory area, AUDp, AUDd"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 264321572, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Chat-IRES-Cre-neo - Intermediate reticular nucleus, IRN, AMB, PGRNl, MDRN, MDRNd"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 179640955, B6.C3H, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Scnn1a-Tg3-Cre - Primary motor area, MOp, SSp-ll"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 305449231, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Slc17a6-IRES-Cre - Parataenial nucleus, PT, PVT, RE"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 266500714, B6.FVB, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Th-Cre_FI172 - Periaqueductal gray, PAG, DR, CLI, IV, MRN"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 267930978, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Nos1-CreERT2 - Secondary motor area, MOs, ACAd"

Study: Mouse Connectivity Projection

	Prenatal (27)
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	Adult (828)
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	FISH (104)
	ISH (450)
	Microarray (24)
	RNA Sequencing (31)
	XFP (6)
	viral tracer (462)

	Aging Dementia TBI - non-ISH data (10)
	Developing Human Prenatal LMD Microarray (7)
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	Developing Mouse Brain (21)
	Glioblastoma (9)
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	Human Glioblastoma RNASeq (8)
	Mouse Brain (13)
	Mouse Cell Types - transcriptomics data (8)
	Mouse Connectivity Projection (438)
	Mouse Connectivity Transgenic Characterization (512)
	Mouse Connectivity anterograde Cre-defined EGFP (12)
	Mouse Connectivity anterograde Cre-defined SypEGFP (11)
	Mouse Spinal Cord (10)
	Non-Human Primate Macrodissection Microarray (5)
	Non-Human Primate Microdissection Microarray (5)
	Transgenic Characterization - serial two-photon tomography (1)

	B6.129 (700)
	B6.129.FVB (44)
	B6.C3H (61)
	B6.FVB (114)
	B6.FVB(ICR) (51)
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	C57BL/6J (40)

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	coronal (764)
	sagittal (240)
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	Human (46)
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	Female (450)
	Male (636)

	control (24)
	glioblastoma (16)

	Passed QC (1041)
	Failed QC (37)