Allen Brain Atlas

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viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 167791990, B6.FVB, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Nr5a1-Cre - Secondary motor area, MOs" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 287448038, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Slc17a6-IRES-Cre - Inferior colliculus, IC" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 257667830, B6.C3H, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Scnn1a-Tg3-Cre - posteromedial visual area, VISpm, VISp" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 168663472, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Slc17a6-IRES-Cre - Zona incerta, ZI, STN, VM, VPM, PSTN, LHA, PO, PST, VPL, LP" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 286726065, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Avp-IRES2-Cre - Supraoptic nucleus, SO" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 12 wks, coronal Experiment: 179904203, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Lepr-IRES-Cre - Ventral premammillary nucleus, PMv, PVp, ARH, TU, TMv, VMH, TMd, DMH" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 299623085, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm)", "Slc32a1-IRES-Cre - Cortical amygdalar area, posterior part, COAp, BMA, PA" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 265944167, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Ntrk1-IRES-Cre - Globus pallidus, external segment, GPe, GPi, SI" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 12 wks, coronal Experiment: 266172624, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Trib2-F2A-CreERT2 - Primary somatosensory area, barrel field, SSp-bfd, SSp-n, SSp-un" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 307655867, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Adcyap1-2A-Cre - Medial mammillary nucleus, MM, PH, SUM, PAG, IF" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 292211026, B6.129, "tissuecyte, PMT, (V), tissuecyte, IR, Power, (W), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Fezf1-T2A-dCre - Ventromedial hypothalamic nucleus, VMH, TU, PeF, AHN, DMH" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, P80, coronal Experiment: 299403823, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Nos1-CreERT2 - Entorhinal area, medial part, dorsal zone, ENTm" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 266410659, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", Failed QC, "Slc17a6-IRES-Cre - Secondary motor area, MOs, ACAd" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 113314337, B6.129, "tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Lepr-IRES-Cre - Dorsomedial nucleus of the hypothalamus, DMH, PH, PVi, VMH" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 12 wks, coronal Experiment: 177606140, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Chat-IRES-Cre-neo - Hypoglossal nucleus, XII, DMX, NR" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 168616111, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Chat-IRES-Cre-neo - Abducens nucleus, VI" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P83, coronal Experiment: 304612686, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Nxph4-T2A-CreERT2 - Dorsal motor nucleus of the vagus nerve, DMX, NTS, XII" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 267538006, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Slc32a1-IRES-Cre - Ventral part of the lateral geniculate complex, LGv, CA3, IGL, ZI, CA1, CA2, LGd, RT, IntG" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P75, coronal Experiment: 309580102, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Slc32a1-IRES-Cre - Orbital area, ventrolateral part, ORBvl, ORBl" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 147051682, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Oxt-IRES-Cre - Paraventricular hypothalamic nucleus, descending division, PVHd, PVH" Study: Mouse Connectivity Projection
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viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 167791990, B6.FVB, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Nr5a1-Cre - Secondary motor area, MOs"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 287448038, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Slc17a6-IRES-Cre - Inferior colliculus, IC"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 257667830, B6.C3H, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Scnn1a-Tg3-Cre - posteromedial visual area, VISpm, VISp"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 168663472, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Slc17a6-IRES-Cre - Zona incerta, ZI, STN, VM, VPM, PSTN, LHA, PO, PST, VPL, LP"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 286726065, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Avp-IRES2-Cre - Supraoptic nucleus, SO"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 12 wks, coronal

Experiment: 179904203, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm)", "Lepr-IRES-Cre - Ventral premammillary nucleus, PMv, PVp, ARH, TU, TMv, VMH, TMd, DMH"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 299623085, B6.129, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm)", "Slc32a1-IRES-Cre - Cortical amygdalar area, posterior part, COAp, BMA, PA"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 265944167, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Ntrk1-IRES-Cre - Globus pallidus, external segment, GPe, GPi, SI"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 12 wks, coronal

Experiment: 266172624, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Trib2-F2A-CreERT2 - Primary somatosensory area, barrel field, SSp-bfd, SSp-n, SSp-un"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 307655867, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Adcyap1-2A-Cre - Medial mammillary nucleus, MM, PH, SUM, PAG, IF"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 292211026, B6.129, "tissuecyte, PMT, (V), tissuecyte, IR, Power, (W), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Fezf1-T2A-dCre - Ventromedial hypothalamic nucleus, VMH, TU, PeF, AHN, DMH"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, P80, coronal

Experiment: 299403823, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW)", "Nos1-CreERT2 - Entorhinal area, medial part, dorsal zone, ENTm"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 266410659, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", Failed QC, "Slc17a6-IRES-Cre - Secondary motor area, MOs, ACAd"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 113314337, B6.129, "tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Lepr-IRES-Cre - Dorsomedial nucleus of the hypothalamus, DMH, PH, PVi, VMH"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 12 wks, coronal

Experiment: 177606140, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Chat-IRES-Cre-neo - Hypoglossal nucleus, XII, DMX, NR"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 168616111, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Chat-IRES-Cre-neo - Abducens nucleus, VI"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P83, coronal

Experiment: 304612686, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Nxph4-T2A-CreERT2 - Dorsal motor nucleus of the vagus nerve, DMX, NTS, XII"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 267538006, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Slc32a1-IRES-Cre - Ventral part of the lateral geniculate complex, LGv, CA3, IGL, ZI, CA1, CA2, LGd, RT, IntG"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P75, coronal

Experiment: 309580102, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Slc32a1-IRES-Cre - Orbital area, ventrolateral part, ORBvl, ORBl"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 147051682, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Oxt-IRES-Cre - Paraventricular hypothalamic nucleus, descending division, PVHd, PVH"

Study: Mouse Connectivity Projection

	Prenatal (27)
	Juvenile (225)
	Adult (828)
	Aged (10)

	FISH (104)
	ISH (450)
	Microarray (24)
	RNA Sequencing (31)
	XFP (6)
	viral tracer (462)

	Aging Dementia TBI - non-ISH data (10)
	Developing Human Prenatal LMD Microarray (7)
	Developing Human Transcriptome (5)
	Developing Mouse Brain (21)
	Glioblastoma (9)
	Human Brain Microarray (7)
	Human Glioblastoma RNASeq (8)
	Mouse Brain (13)
	Mouse Cell Types - transcriptomics data (8)
	Mouse Connectivity Projection (438)
	Mouse Connectivity Transgenic Characterization (512)
	Mouse Connectivity anterograde Cre-defined EGFP (12)
	Mouse Connectivity anterograde Cre-defined SypEGFP (11)
	Mouse Spinal Cord (10)
	Non-Human Primate Macrodissection Microarray (5)
	Non-Human Primate Microdissection Microarray (5)
	Transgenic Characterization - serial two-photon tomography (1)

	B6.129 (700)
	B6.129.FVB (44)
	B6.C3H (61)
	B6.FVB (114)
	B6.FVB(ICR) (51)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (40)

	Asian (12)
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	Two or more races (5)
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	Dorsal to Ventral (1)
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	Medial to Lateral (1)
	Ventral to Dorsal (2)
	coronal (764)
	sagittal (240)
	variable (11)

	Brain (512)
	frontal lobe (4)
	parietal lobe (3)
	temporal lobe (1)

	Human (46)
	Mouse (1022)
	NHP (10)

	Female (450)
	Male (636)

	control (24)
	glioblastoma (16)

	Passed QC (1041)
	Failed QC (37)