Allen Brain Atlas

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viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 166326029, B6.C3H, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Scnn1a-Tg3-Cre - Primary somatosensory area, upper limb, SSp-ul, SSp-ll" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 176496282, B6.129, "Pvalb-IRES-Cre - Primary somatosensory area, unassigned, SSp-un, SSp-bfd, SSp-n" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 182615063, B6.FVB(ICR), "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Grp-Cre_KH288 - Field CA3, CA3, CA2, CA1" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 165034344, B6.FVB, "tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Sim1-Cre_KJ18 - Medial amygdalar nucleus, MEA, BMA, GPi, SI, CEA, LHA, GPe" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 267397226, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Avp-IRES2-Cre - Tuberal nucleus, TU, LHA, PeF" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 286608092, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Slc17a6-IRES-Cre - Dentate nucleus, DN, IP" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 278502708, B6.C3H, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Scnn1a-Tg3-Cre - Anterior cingulate area, ventral part, ACAv, ACAd" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 265138021, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Tac2-IRES2-Cre - Bed nuclei of the stria terminalis, BST, LHA, LPO" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 165973664, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Chat-IRES-Cre-neo - Hypoglossal nucleus, XII, DMX, NTS, NR, MDRN, MDRNv" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, P78, coronal Experiment: 277905331, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", Failed QC, "Crh-IRES-Cre_BL - Spinal nucleus of the trigeminal, caudal part, SPVC" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 287599685, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Trib2-F2A-CreERT2 - Anterior cingulate area, dorsal part, ACAd, MOs" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 12 wks, coronal Experiment: 181259279, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Tac1-IRES2-Cre - Secondary motor area, MOs, MOp" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 293914766, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Slc17a6-IRES-Cre - Dorsal part of the lateral geniculate complex, LGd" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 182804552, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Motor nucleus of trigeminal, V, P5, IRN, PARN, SUT, PC5, PSV, I5, SPVO, Acs5" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 287600392, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Trib2-F2A-CreERT2 - Anterior cingulate area, ventral part, ACAv, ACAd" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 265929968, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Ntrk1-IRES-Cre - Caudoputamen, CP" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 12 wks, coronal Experiment: 549805072, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Cart-IRES2-Cre - Medial amygdalar nucleus, MEA, CEA, IA, BMA" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 180525136, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Tac1-IRES2-Cre - Nucleus of the solitary tract, NTS, DMX, GR, CU" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 113934579, B6.C3H, "Scnn1a-Tg3-Cre - Postsubiculum, POST, VISp" Study: Mouse Connectivity Projection
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 287665706, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Avp-IRES2-Cre - Suprachiasmatic nucleus, SCH, VMH, RCH, ARH, SBPV, TU, PVa, AHN, PVi" Study: Mouse Connectivity Projection
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viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 166326029, B6.C3H, "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Scnn1a-Tg3-Cre - Primary somatosensory area, upper limb, SSp-ul, SSp-ll"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 176496282, B6.129, "Pvalb-IRES-Cre - Primary somatosensory area, unassigned, SSp-un, SSp-bfd, SSp-n"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 182615063, B6.FVB(ICR), "tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um)", "Grp-Cre_KH288 - Field CA3, CA3, CA2, CA1"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 165034344, B6.FVB, "tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Sim1-Cre_KJ18 - Medial amygdalar nucleus, MEA, BMA, GPi, SI, CEA, LHA, GPe"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 267397226, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Avp-IRES2-Cre - Tuberal nucleus, TU, LHA, PeF"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 286608092, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Slc17a6-IRES-Cre - Dentate nucleus, DN, IP"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 278502708, B6.C3H, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Scnn1a-Tg3-Cre - Anterior cingulate area, ventral part, ACAv, ACAd"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 265138021, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Tac2-IRES2-Cre - Bed nuclei of the stria terminalis, BST, LHA, LPO"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 165973664, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Chat-IRES-Cre-neo - Hypoglossal nucleus, XII, DMX, NTS, NR, MDRN, MDRNv"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, P78, coronal

Experiment: 277905331, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", Failed QC, "Crh-IRES-Cre_BL - Spinal nucleus of the trigeminal, caudal part, SPVC"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 287599685, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Trib2-F2A-CreERT2 - Anterior cingulate area, dorsal part, ACAd, MOs"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 12 wks, coronal

Experiment: 181259279, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Tac1-IRES2-Cre - Secondary motor area, MOs, MOp"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 293914766, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Slc17a6-IRES-Cre - Dorsal part of the lateral geniculate complex, LGd"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 182804552, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V)", "Pvalb-IRES-Cre - Motor nucleus of trigeminal, V, P5, IRN, PARN, SUT, PC5, PSV, I5, SPVO, Acs5"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 287600392, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Trib2-F2A-CreERT2 - Anterior cingulate area, ventral part, ACAv, ACAd"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 265929968, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Ntrk1-IRES-Cre - Caudoputamen, CP"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 12 wks, coronal

Experiment: 549805072, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Cart-IRES2-Cre - Medial amygdalar nucleus, MEA, CEA, IA, BMA"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 180525136, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Tac1-IRES2-Cre - Nucleus of the solitary tract, NTS, DMX, GR, CU"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 113934579, B6.C3H, "Scnn1a-Tg3-Cre - Postsubiculum, POST, VISp"

Study: Mouse Connectivity Projection

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 287665706, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um)", "Avp-IRES2-Cre - Suprachiasmatic nucleus, SCH, VMH, RCH, ARH, SBPV, TU, PVa, AHN, PVi"

Study: Mouse Connectivity Projection

	Prenatal (27)
	Juvenile (225)
	Adult (828)
	Aged (10)

	FISH (104)
	ISH (450)
	Microarray (24)
	RNA Sequencing (31)
	XFP (6)
	viral tracer (462)

	Aging Dementia TBI - non-ISH data (10)
	Developing Human Prenatal LMD Microarray (7)
	Developing Human Transcriptome (5)
	Developing Mouse Brain (21)
	Glioblastoma (9)
	Human Brain Microarray (7)
	Human Glioblastoma RNASeq (8)
	Mouse Brain (13)
	Mouse Cell Types - transcriptomics data (8)
	Mouse Connectivity Projection (438)
	Mouse Connectivity Transgenic Characterization (512)
	Mouse Connectivity anterograde Cre-defined EGFP (12)
	Mouse Connectivity anterograde Cre-defined SypEGFP (11)
	Mouse Spinal Cord (10)
	Non-Human Primate Macrodissection Microarray (5)
	Non-Human Primate Microdissection Microarray (5)
	Transgenic Characterization - serial two-photon tomography (1)

	B6.129 (700)
	B6.129.FVB (44)
	B6.C3H (61)
	B6.FVB (114)
	B6.FVB(ICR) (51)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (40)

	Asian (12)
	Black or African American (19)
	European (5)
	Hispanic (12)
	Two or more races (5)
	White or Caucasian (19)

	Dorsal to Ventral (1)
	Lateral to Medial (3)
	Medial to Lateral (1)
	Ventral to Dorsal (2)
	coronal (764)
	sagittal (240)
	variable (11)

	Brain (512)
	frontal lobe (4)
	parietal lobe (3)
	temporal lobe (1)

	Human (46)
	Mouse (1022)
	NHP (10)

	Female (450)
	Male (636)

	control (24)
	glioblastoma (16)

	Passed QC (1041)
	Failed QC (37)