Allen Brain Atlas

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Differential gene expression search in Hippocampus NIH Blueprint NHP Atlas differential gene expression search in Hippocampus Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in Amygdala NIH Blueprint NHP Atlas differential gene expression search in Amygdala Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in Basal Ganglia NIH Blueprint NHP Atlas differential gene expression search in Basal Ganglia Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in Cortex Layer 1 NIH Blueprint NHP Atlas differential gene expression search in Cortex Layer 1 Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in Cortex Layer 2 NIH Blueprint NHP Atlas differential gene expression search in Cortex Layer 2 Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in Cortex Layer 3 NIH Blueprint NHP Atlas differential gene expression search in Cortex Layer 3 Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in Cortex Layer 4 NIH Blueprint NHP Atlas differential gene expression search in Cortex Layer 4 Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in Cortex Layer 5 NIH Blueprint NHP Atlas differential gene expression search in Cortex Layer 5 Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in Cortex Layer 6 NIH Blueprint NHP Atlas differential gene expression search in Cortex Layer 6 Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in Dentate Gyrus NIH Blueprint NHP Atlas differential gene expression search in Dentate Gyrus Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in CA1 field NIH Blueprint NHP Atlas differential gene expression search in CA1 field Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in CA2 field NIH Blueprint NHP Atlas differential gene expression search in CA2 field Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in CA3 field NIH Blueprint NHP Atlas differential gene expression search in CA3 field Study: Non-Human Primate Microdissection Microarray
Differential gene expression search in CA4 field NIH Blueprint NHP Atlas differential gene expression search in CA4 field Study: Non-Human Primate Microdissection Microarray
Overview of ISH methods for the NIH Blueprint NHP Atlas Overview of methods for in situ hybridization Study: Non-Human Primate ISH
ISH Platform Controls Quality control standards for high-throughput RNA in situ hybridization data generation Study: Sleep
Visualization of Changes in Gene Expression using Brain Explorer Generation and use of difference grid files Study: Sleep
W1-1-2-H.2.03 Specimen W1-1-2-H.2.03, frontal lobe, 66 yrs, Male, Classical Study: Glioblastoma
W1-1-2-H.2.02 Specimen W1-1-2-H.2.02, frontal lobe, 66 yrs, Male, Classical Study: Glioblastoma
W2-1-1-K.2.04 Specimen W2-1-1-K.2.04, frontal lobe, 64 yrs, Female, "Classical, Neural" Study: Glioblastoma
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Differential gene expression search in Hippocampus

NIH Blueprint NHP Atlas differential gene expression search in Hippocampus

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in Amygdala

NIH Blueprint NHP Atlas differential gene expression search in Amygdala

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in Basal Ganglia

NIH Blueprint NHP Atlas differential gene expression search in Basal Ganglia

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in Cortex Layer 1

NIH Blueprint NHP Atlas differential gene expression search in Cortex Layer 1

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in Cortex Layer 2

NIH Blueprint NHP Atlas differential gene expression search in Cortex Layer 2

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in Cortex Layer 3

NIH Blueprint NHP Atlas differential gene expression search in Cortex Layer 3

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in Cortex Layer 4

NIH Blueprint NHP Atlas differential gene expression search in Cortex Layer 4

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in Cortex Layer 5

NIH Blueprint NHP Atlas differential gene expression search in Cortex Layer 5

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in Cortex Layer 6

NIH Blueprint NHP Atlas differential gene expression search in Cortex Layer 6

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in Dentate Gyrus

NIH Blueprint NHP Atlas differential gene expression search in Dentate Gyrus

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in CA1 field

NIH Blueprint NHP Atlas differential gene expression search in CA1 field

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in CA2 field

NIH Blueprint NHP Atlas differential gene expression search in CA2 field

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in CA3 field

NIH Blueprint NHP Atlas differential gene expression search in CA3 field

Study: Non-Human Primate Microdissection Microarray

Differential gene expression search in CA4 field

NIH Blueprint NHP Atlas differential gene expression search in CA4 field

Study: Non-Human Primate Microdissection Microarray

Overview of ISH methods for the NIH Blueprint NHP Atlas

Overview of methods for in situ hybridization

Study: Non-Human Primate ISH

ISH Platform Controls

Quality control standards for high-throughput RNA in situ hybridization data generation

Study: Sleep

Visualization of Changes in Gene Expression using Brain Explorer

Generation and use of difference grid files

Study: Sleep

W1-1-2-H.2.03 Specimen

W1-1-2-H.2.03, frontal lobe, 66 yrs, Male, Classical

Study: Glioblastoma

W1-1-2-H.2.02 Specimen

W1-1-2-H.2.02, frontal lobe, 66 yrs, Male, Classical

Study: Glioblastoma

W2-1-1-K.2.04 Specimen

W2-1-1-K.2.04, frontal lobe, 64 yrs, Female, "Classical, Neural"

Study: Glioblastoma

	Prenatal (9896)
	Juvenile (57411)
	Adult (116514)
	Aged (32659)

	FISH (300)
	ISH (137378)
	Microarray (290)
	RNA Sequencing (26216)
	Resource (5)

	Aging Dementia TBI - ISH data (1570)
	Aging Dementia TBI - non-ISH data (109)
	Developing Human Brain ISH (3941)
	Developing Human Prenatal LMD Microarray (243)
	Developing Human Reference Data (163)
	Developing Human Transcriptome (285)
	Developing Mouse Brain (21463)
	Glioblastoma (20203)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6670)
	Human Brain ISH Neurotransmitter Study (11670)
	Human Brain ISH Schizophrenia Study (3378)
	Human Brain ISH SubCortex Study (462)
	Human Brain Microarray (88)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (28886)
	Mouse Brain Reference Data (1)
	Mouse Cell Types - transcriptomics data (112)
	Mouse Connectivity Projection (1)
	Mouse Connectivity Transgenic Characterization (1850)
	Mouse Spinal Cord (36698)
	Mouse Strains (1080)
	Non-Human Primate ISH (3057)
	Non-Human Primate Macrodissection Microarray (65)
	Non-Human Primate Microdissection Microarray (82)
	Non-Human Primate Molecular Map (133)
	Sleep (1727)

	129/SvJ (10)
	129S1/SvlmJ (124)
	B6.129 (374)
	B6.129.FVB (39)
	B6.C3H (17)
	B6.FVB (35)
	B6.FVB(ICR) (37)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (85098)
	CAST/EiJ (124)
	DBA/2J (124)
	FVB (23)
	FVB.CD1(ICR) (14)
	FVB/NJ (8)
	PWD/PhJ (93)
	SPRET/EiJ (124)
	WSB/EiJ (93)
	ai2/thcre (1)
	ctgf-cre (2)
	wfs1-creer (2)

	Asian (339)
	Black or African American (8233)
	European (122)
	Hispanic (4125)
	Two or more races (122)
	White or Caucasian (14290)

	Dorsal to Ventral (1096)
	Lateral to Medial (3332)
	Medial to Lateral (5219)
	Ventral to Dorsal (7134)
	coronal (27597)
	sagittal (43609)
	variable (38372)

	autism (258)
	control (26146)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1914)
	Brain (1981)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2843)
	Claustrum/Insula (1229)
	Dorsolateral prefrontal cortex (3824)
	Frontal Cortex (4049)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	SubCortex (1144)
	Temporal cortex (3392)
	Ventral Anterior Cingulate (20)
	Ventral striatum (788)
	Visual Cortex (802)
	Visual cortex (3303)
	amygdaloid complex (576)
	brain (173)
	frontal lobe (5823)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (715)
	occipital cortex (576)
	occipital lobe (955)
	parietal lobe (7171)
	parietal neocortex (498)
	temporal lobe (5774)
	temporal neocortex (550)
	ventral striatum (576)

	Human (74689)
	Mouse (87459)
	NHP (3204)

	Female (44466)
	Male (141492)

	Passed QC (160928)
	Failed QC (4424)