Allen Brain Atlas

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Field CA3, stratum lacunosum-moleculare Structure in the Developing Mouse Brain Atlas CA3slm, Developing Mouse Brain Atlas, Mus musculus Atlas: Developing Mouse P56
induseum griseum Structure in the Developing Mouse Brain Atlas IG, Developing Mouse Brain Atlas, Mus musculus Atlases: Developing Mouse E15.5, Developing Mouse P56
mantle zone of the IG Structure in the Developing Mouse Brain Atlas IGm, Developing Mouse Brain Atlas, Mus musculus Atlases: Developing Mouse E15.5, Developing Mouse P56
periventricular stratum of the IG Structure in the Developing Mouse Brain Atlas IGp, Developing Mouse Brain Atlas, Mus musculus Atlas: Developing Mouse E15.5
intermediate stratum of the IG Structure in the Developing Mouse Brain Atlas IGi, Developing Mouse Brain Atlas, Mus musculus Atlas: Developing Mouse E15.5
superficial stratum of the IG Structure in the Developing Mouse Brain Atlas IGs, Developing Mouse Brain Atlas, Mus musculus Atlases: Developing Mouse E15.5, Developing Mouse P56
pyramidal layer of IG Structure in the Developing Mouse Brain Atlas PyIG, Developing Mouse Brain Atlas, Mus musculus Atlas: Developing Mouse P56
taenia tecta Structure in the Developing Mouse Brain Atlas TTe, Developing Mouse Brain Atlas, Mus musculus Atlases: Developing Mouse E15.5, Developing Mouse P56
mantle zone of TTe Structure in the Developing Mouse Brain Atlas TTem, Developing Mouse Brain Atlas, Mus musculus Atlases: Developing Mouse E15.5, Developing Mouse P56
periventricular stratum of TTe Structure in the Developing Mouse Brain Atlas TTep, Developing Mouse Brain Atlas, Mus musculus Atlases: Developing Mouse E15.5, Developing Mouse P56
dorsal peduncular cortex, periventricular part Structure in the Developing Mouse Brain Atlas DPp, Developing Mouse Brain Atlas, Mus musculus Atlas: Developing Mouse P56
intermediate stratum of TTe Structure in the Developing Mouse Brain Atlas TTei, Developing Mouse Brain Atlas, Mus musculus Atlases: Developing Mouse E15.5, Developing Mouse P56
dorsal peduncular cortex, intermediate part Structure in the Developing Mouse Brain Atlas DPi, Developing Mouse Brain Atlas, Mus musculus Atlas: Developing Mouse P56
superficial stratum of TTe Structure in the Developing Mouse Brain Atlas TTes, Developing Mouse Brain Atlas, Mus musculus Atlases: Developing Mouse E15.5, Developing Mouse P56
pyramidal layer of taenia tecta Structure in the Developing Mouse Brain Atlas PyTT, Developing Mouse Brain Atlas, Mus musculus Atlas: Developing Mouse P56
subiculum Structure in the Developing Mouse Brain Atlas S, Developing Mouse Brain Atlas, Mus musculus Atlases: Developing Mouse E15.5, Developing Mouse P56
ventricular zone of S Structure in the Developing Mouse Brain Atlas Sv, Developing Mouse Brain Atlas, Mus musculus Atlas: Developing Mouse E15.5
mantle zone of S Structure in the Developing Mouse Brain Atlas Sm, Developing Mouse Brain Atlas, Mus musculus Atlases: Developing Mouse E15.5, Developing Mouse P56
periventricular stratum of S Structure in the Developing Mouse Brain Atlas Sp, Developing Mouse Brain Atlas, Mus musculus Atlas: Developing Mouse E15.5
intermediate stratum of S Structure in the Developing Mouse Brain Atlas Si, Developing Mouse Brain Atlas, Mus musculus Atlas: Developing Mouse E15.5
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Field CA3, stratum lacunosum-moleculare Structure in the Developing Mouse Brain Atlas

CA3slm, Developing Mouse Brain Atlas, Mus musculus

Atlas: Developing Mouse P56

induseum griseum Structure in the Developing Mouse Brain Atlas

IG, Developing Mouse Brain Atlas, Mus musculus

Atlases: Developing Mouse E15.5, Developing Mouse P56

mantle zone of the IG Structure in the Developing Mouse Brain Atlas

IGm, Developing Mouse Brain Atlas, Mus musculus

Atlases: Developing Mouse E15.5, Developing Mouse P56

periventricular stratum of the IG Structure in the Developing Mouse Brain Atlas

IGp, Developing Mouse Brain Atlas, Mus musculus

Atlas: Developing Mouse E15.5

intermediate stratum of the IG Structure in the Developing Mouse Brain Atlas

IGi, Developing Mouse Brain Atlas, Mus musculus

Atlas: Developing Mouse E15.5

superficial stratum of the IG Structure in the Developing Mouse Brain Atlas

IGs, Developing Mouse Brain Atlas, Mus musculus

Atlases: Developing Mouse E15.5, Developing Mouse P56

pyramidal layer of IG Structure in the Developing Mouse Brain Atlas

PyIG, Developing Mouse Brain Atlas, Mus musculus

Atlas: Developing Mouse P56

taenia tecta Structure in the Developing Mouse Brain Atlas

TTe, Developing Mouse Brain Atlas, Mus musculus

Atlases: Developing Mouse E15.5, Developing Mouse P56

mantle zone of TTe Structure in the Developing Mouse Brain Atlas

TTem, Developing Mouse Brain Atlas, Mus musculus

Atlases: Developing Mouse E15.5, Developing Mouse P56

periventricular stratum of TTe Structure in the Developing Mouse Brain Atlas

TTep, Developing Mouse Brain Atlas, Mus musculus

Atlases: Developing Mouse E15.5, Developing Mouse P56

dorsal peduncular cortex, periventricular part Structure in the Developing Mouse Brain Atlas

DPp, Developing Mouse Brain Atlas, Mus musculus

Atlas: Developing Mouse P56

intermediate stratum of TTe Structure in the Developing Mouse Brain Atlas

TTei, Developing Mouse Brain Atlas, Mus musculus

Atlases: Developing Mouse E15.5, Developing Mouse P56

dorsal peduncular cortex, intermediate part Structure in the Developing Mouse Brain Atlas

DPi, Developing Mouse Brain Atlas, Mus musculus

Atlas: Developing Mouse P56

superficial stratum of TTe Structure in the Developing Mouse Brain Atlas

TTes, Developing Mouse Brain Atlas, Mus musculus

Atlases: Developing Mouse E15.5, Developing Mouse P56

pyramidal layer of taenia tecta Structure in the Developing Mouse Brain Atlas

PyTT, Developing Mouse Brain Atlas, Mus musculus

Atlas: Developing Mouse P56

subiculum Structure in the Developing Mouse Brain Atlas

S, Developing Mouse Brain Atlas, Mus musculus

Atlases: Developing Mouse E15.5, Developing Mouse P56

ventricular zone of S Structure in the Developing Mouse Brain Atlas

Sv, Developing Mouse Brain Atlas, Mus musculus

Atlas: Developing Mouse E15.5

mantle zone of S Structure in the Developing Mouse Brain Atlas

Sm, Developing Mouse Brain Atlas, Mus musculus

Atlases: Developing Mouse E15.5, Developing Mouse P56

periventricular stratum of S Structure in the Developing Mouse Brain Atlas

Sp, Developing Mouse Brain Atlas, Mus musculus

Atlas: Developing Mouse E15.5

intermediate stratum of S Structure in the Developing Mouse Brain Atlas

Si, Developing Mouse Brain Atlas, Mus musculus

Atlas: Developing Mouse E15.5

	Prenatal (106187)
	Juvenile (140531)
	Adult (200808)
	Aged (32892)

	BDA (70)
	Electrophysiology (2336)
	FISH (288)
	IHC (2)
	ISH (132966)
	Microarray (89114)
	RNA Sequencing (174307)
	Resource (38)
	XFP (29)
	viral tracer (3956)

	Aging Dementia TBI - ISH data (1576)
	Aging Dementia TBI - non-ISH data (50281)
	Connectivity projection mapping for cell type characterization (57)
	Developing Human Brain ISH (5107)
	Developing Human Prenatal LMD Microarray (30555)
	Developing Human Reference Data (1377)
	Developing Human Transcriptome (53751)
	Developing Mouse Brain (22651)
	Developing Mouse Brain Reference Data (2372)
	Glioblastoma (20691)
	Human Brain ISH Autism Study (528)
	Human Brain ISH Cortex Study (6526)
	Human Brain ISH Neurotransmitter Study (11637)
	Human Brain ISH Schizophrenia Study (3316)
	Human Brain ISH SubCortex Study (1307)
	Human Brain Microarray (30040)
	Human Cell Types (413)
	Human Glioblastoma RNASeq (26085)
	Mouse Brain (27284)
	Mouse Brain Reference Data (1093)
	Mouse Cell Types (1931)
	Mouse Cell Types - transcriptomics data (45771)
	Mouse Connectivity Alzheimer (343)
	Mouse Connectivity Alzheimer anterograde Cre-defined (45)
	Mouse Connectivity Alzheimer anterograde Cre-defined SypEGFP (13)
	Mouse Connectivity Alzheimer target-defined anterograde (14)
	Mouse Connectivity BDA/AAV Comparison (171)
	Mouse Connectivity Projection (3648)
	Mouse Connectivity Retina Projection (77)
	Mouse Connectivity Transgenic Characterization (1852)
	Mouse Connectivity Vertical Retina (161)
	Mouse Connectivity aged control (274)
	Mouse Connectivity aged control anterograde Cre-defined (59)
	Mouse Connectivity aged control anterograde Cre-defined SypEGFP (18)
	Mouse Connectivity aged control target-defined anterograde (9)
	Mouse Connectivity anterograde Cre-defined EGFP (222)
	Mouse Connectivity anterograde Cre-defined SypEGFP (206)
	Mouse Spinal Cord (35928)
	Mouse Spinal Cord Reference Data (2)
	Mouse Strains (1047)
	Mouse connectivity target-defined anterograde projectome (associational cortical areas) (150)
	Mouse connectivity target-defined anterograde projectome (visual areas) (72)
	Multi-plane optical physiology during image change detection (121)
	Non-Human Primate ISH (3061)
	Non-Human Primate Macrodissection Microarray (15377)
	Non-Human Primate Microdissection Microarray (15399)
	Non-Human Primate Molecular Map (133)
	Single-plane optical physiology during image change detection (35)
	Single-plane optical physiology during image change detection with reversed training set (28)
	Sleep (2822)
	Transgenic Characterization - serial two-photon tomography (56)
	Visual Behavior Intrinsic Signal Imaging (184)
	Visual Coding Optical Physiology (456)
	Visual Coding Transgenic Characterization serial two-photon tomography (19)

	129/SvJ (10)
	129S1/SvlmJ (117)
	American Indian and Alaska Native (8)
	B6.129 (684)
	B6.129.FVB (35)
	B6.C3H (60)
	B6.FVB (105)
	B6.FVB(ICR) (50)
	B6129PF1/J (4)
	B6129SF1/J (20)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (82358)
	CAST/EiJ (117)
	DBA/2J (117)
	FVB (28)
	FVB.CD1(ICR) (172)
	FVB/NJ (8)
	Non-Hispanic (43)
	PWD/PhJ (93)
	SPRET/EiJ (117)
	WSB/EiJ (93)

	Asian (81691)
	Black or African American (118543)
	European (52376)
	Hispanic (85427)
	Two or more races (52376)
	White or Caucasian (124658)

	Coronal (Caudal to Rostral) (213)
	Dorsal to Ventral (1116)
	Lateral to Medial (3421)
	Medial to Lateral (5314)
	Ventral to Dorsal (7319)
	coronal (31578)
	sagittal (40758)
	variable (37779)

	Alzheimer (334)
	autism (258)
	control (151895)
	glioblastoma (32400)
	schizophrenia (1231)
	traumatic brain injury (762)

	Amygdala/Hippocampus (1875)
	Anterior area layer 4 (3)
	Anterior area layer 5 (1)
	Anterior area layer 6b (1)
	Anterolateral visual area layer 1 (2)
	Anterolateral visual area layer 2/3 (6)
	Anterolateral visual area layer 4 (2)
	Anterolateral visual area layer 5 (5)
	Anterolateral visual area layer 6a (1)
	Anterolateral visual area layer 6b (1)
	Anteromedial visual area layer 1 (1)
	Anteromedial visual area layer 2/3 (3)
	Anteromedial visual area layer 4 (3)
	Anteromedial visual area layer 5 (2)
	Brain (1983)
	Brainstem (43)
	Cerebellum (43)
	Cingulate Cortex (2837)
	Claustrum/Insula (1226)
	Dorsolateral prefrontal cortex (3762)
	Frontal Cortex (4027)
	Lateral visual area layer 1 (3)
	Lateral visual area layer 2/3 (8)
	Lateral visual area layer 4 (18)
	Lateral visual area layer 5 (34)
	Lateral visual area layer 6a (21)
	Lateral visual area layer 6b (5)
	Laterointermediate area layer 2/3 (4)
	Laterointermediate area layer 4 (3)
	Laterointermediate area layer 5 (7)
	Laterointermediate area layer 6a (4)
	Laterointermediate area layer 6b (1)
	Parieto-Occipital Cortex (2201)
	Posterior Superior Temporal Cortex (37)
	Posterior auditory area layer 5 (2)
	Posterolateral visual area layer 2/3 (3)
	Posterolateral visual area layer 4 (1)
	Posterolateral visual area layer 5 (7)
	Posterolateral visual area layer 6b (10)
	Postrhinal area layer 2/3 (1)
	Postrhinal area layer 4 (4)
	Postrhinal area layer 5 (12)
	Postrhinal area layer 6a (6)
	Postrhinal area layer 6b (2)
	Primary auditory area layer 2/3 (1)
	Primary auditory area layer 6a (1)
	Primary somatosensory area barrel field layer 2/3 (1)
	Primary somatosensory area barrel field layer 4 (2)
	Primary somatosensory area barrel field layer 5 (2)
	Primary somatosensory area layer 6b (1)
	Primary somatosensory area nose layer 4 (1)
	Primary somatosensory area trunk layer 4 (3)
	Primary somatosensory area trunk layer 5 (1)
	Primary somatosensory area unassigned layer 5 (1)
	Primary visual area layer 1 (42)
	Primary visual area layer 2/3 (311)
	Primary visual area layer 4 (458)
	Primary visual area layer 5 (505)
	Primary visual area layer 6a (224)
	Primary visual area layer 6b (48)
	Retina (161)
	Retrosplenial area dorsal part layer 2/3 (3)
	Retrosplenial area dorsal part layer 5 (6)
	Retrosplenial area dorsal part layer 6a (10)
	Retrosplenial area lateral agranular part layer 1 (2)
	Retrosplenial area lateral agranular part layer 2/3 (6)
	Retrosplenial area lateral agranular part layer 5 (6)
	Retrosplenial area lateral agranular part layer 6a (5)
	Retrosplenial area ventral part layer 5 (1)
	Retrosplenial area ventral part layer 6a (1)
	Rostrolateral area layer 2/3 (1)
	Rostrolateral area layer 4 (1)
	Rostrolateral area layer 6a (1)
	SubCortex (1142)
	Temporal association areas layer 4 (1)
	Temporal association areas layer 6a (1)
	Temporal cortex (3334)
	Ventral Anterior Cingulate (20)
	Ventral striatum (787)
	Visual Cortex (801)
	Visual cortex (3217)
	amygdaloid complex (576)
	angular gyrus (16)
	brain (173)
	frontal lobe (6008)
	hippocampal cortex (hippocampal formation) (579)
	hippocampus (hippocampal formation) (522)
	inferior frontal gyrus (4)
	inferior temporal gyrus (15)
	medial frontal cortex (areas 24 25 and 32) (576)
	medial prefrontal cortex (713)
	middle frontal gyrus (26)
	middle temporal gyrus (309)
	occipital cortex (576)
	occipital lobe (978)
	parietal lobe (7323)
	parietal neocortex (498)
	planum polare (6)
	posteromedial visual area layer 1 (8)
	posteromedial visual area layer 2/3 (31)
	posteromedial visual area layer 4 (19)
	posteromedial visual area layer 5 (24)
	posteromedial visual area layer 6a (6)
	posteromedial visual area layer 6b (1)
	superior frontal gyrus (3)
	temporal lobe (5934)
	temporal neocortex (550)
	ventral striatum (576)

	Human (238006)
	Mouse (139668)
	NHP (33837)

	Female (173221)
	Male (282788)

	Passed QC (411511)
	Failed QC (4607)