Allen Brain Atlas

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Ephb6 ISH: Mus musculus, Male, E15.5, sagittal, TS24 Eph receptor B6, entrez_id: 13848, Experiment: 100036606, C57BL/6J Study: Developing Mouse Brain
Ephb6 ISH: Mus musculus, E13.5, sagittal, TS21 Eph receptor B6, entrez_id: 13848, Experiment: 100035698, C57BL/6J, Failed QC Study: Developing Mouse Brain
Hoxb6 ISH: Mus musculus, Male, P4, sagittal homeobox B6, entrez_id: 15414, Experiment: 100081822, C57BL/6J Study: Developing Mouse Brain
Hoxb6 ISH: Mus musculus, E13.5, sagittal, TS21 homeobox B6, entrez_id: 15414, Experiment: 100076410, C57BL/6J Study: Developing Mouse Brain
Ephb6 ISH: Mus musculus, Male, P4, sagittal Eph receptor B6, entrez_id: 13848, Experiment: 100054894, C57BL/6J Study: Developing Mouse Brain
Hoxb6 ISH: Mus musculus, E11.5, sagittal, TS19 homeobox B6, entrez_id: 15414, Experiment: 100075083, C57BL/6J Study: Developing Mouse Brain
viral tracer: Mus musculus, Male, P75, coronal Experiment: 479755622, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Emx1-IRES-Cre - Primary visual area, VISp" Study: Mouse Connectivity anterograde Cre-defined EGFP
Hspb6 ISH: Mus musculus, Male, P56, variable "heat shock protein, alpha-crystallin-related, B6", entrez_id: 243912, Experiment: 100021830, C57BL/6J Study: Mouse Spinal Cord
viral tracer: Mus musculus, Male, P74, coronal Experiment: 478376911, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Emx1-IRES-Cre - Anterior cingulate area, dorsal part, ACAd, ACAv" Study: Mouse Connectivity anterograde Cre-defined SypEGFP
viral tracer: Mus musculus, Male, P76, coronal Experiment: 522408611, B6.FVB, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Tlx3-Cre_PL56 - Primary visual area, VISp" Study: Mouse Connectivity anterograde Cre-defined SypEGFP
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 479671695, B6.C3H, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Scnn1a-Tg2-Cre - Dorsal part of the lateral geniculate complex, LGd, LP, VPM" Study: Mouse Connectivity anterograde Cre-defined SypEGFP
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 480069939, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Emx1-IRES-Cre - Primary visual area, VISp" Study: Mouse Connectivity anterograde Cre-defined SypEGFP
viral tracer: Mus musculus, Female, 11 wks, coronal Experiment: 536299435, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Emx1-IRES-Cre - Primary visual area, VISp" Study: Mouse Connectivity anterograde Cre-defined EGFP
Pdxk ISH: Mus musculus, Male, P4, variable "pyridoxal (pyridoxine, vitamin B6) kinase", entrez_id: 216134, Experiment: 100011321, C57BL/6J Study: Mouse Spinal Cord
viral tracer: Mus musculus, Male, P75, coronal Experiment: 479701339, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Emx1-IRES-Cre - Primary visual area, VISp" Study: Mouse Connectivity anterograde Cre-defined EGFP
viral tracer: Mus musculus, Male, P75, coronal Experiment: 479700629, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Emx1-IRES-Cre - Lateral visual area, VISl" Study: Mouse Connectivity anterograde Cre-defined EGFP
viral tracer: Mus musculus, Male, 11 wks, coronal Experiment: 479984127, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Emx1-IRES-Cre - Primary visual area, VISp, RSPd, RSPagl" Study: Mouse Connectivity anterograde Cre-defined SypEGFP
viral tracer: Mus musculus, Female, P79, coronal Experiment: 523714940, B6.FVB, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Ntsr1-Cre_GN220 - Anteromedial visual area, VISam, VISa, VISpm" Study: Mouse Connectivity anterograde Cre-defined SypEGFP
viral tracer: Mus musculus, Female, P77, coronal Experiment: 479982715, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Emx1-IRES-Cre - Primary visual area, VISp, VISl, ProS, SUB, CA1" Study: Mouse Connectivity anterograde Cre-defined SypEGFP
Hspb6 ISH: Mus musculus, Male, P4, variable Hspb6, Experiment: 100021831, C57BL/6J Study: Mouse Spinal Cord
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Experiment: 479755622, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Power, at, Objective, (mW)", "Emx1-IRES-Cre - Primary visual area, VISp"

Study: Mouse Connectivity anterograde Cre-defined EGFP

Hspb6 ISH: Mus musculus, Male, P56, variable

"heat shock protein, alpha-crystallin-related, B6", entrez_id: 243912, Experiment: 100021830, C57BL/6J

Study: Mouse Spinal Cord

viral tracer: Mus musculus, Male, P74, coronal

Experiment: 478376911, B6.129, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Emx1-IRES-Cre - Anterior cingulate area, dorsal part, ACAd, ACAv"

Study: Mouse Connectivity anterograde Cre-defined SypEGFP

viral tracer: Mus musculus, Male, P76, coronal

Experiment: 522408611, B6.FVB, "tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Tlx3-Cre_PL56 - Primary visual area, VISp"

Study: Mouse Connectivity anterograde Cre-defined SypEGFP

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 479671695, B6.C3H, "tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V)", "Scnn1a-Tg2-Cre - Dorsal part of the lateral geniculate complex, LGd, LP, VPM"

Study: Mouse Connectivity anterograde Cre-defined SypEGFP

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 480069939, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Emx1-IRES-Cre - Primary visual area, VISp"

Study: Mouse Connectivity anterograde Cre-defined SypEGFP

viral tracer: Mus musculus, Female, 11 wks, coronal

Experiment: 536299435, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Emx1-IRES-Cre - Primary visual area, VISp"

Study: Mouse Connectivity anterograde Cre-defined EGFP

Pdxk ISH: Mus musculus, Male, P4, variable

"pyridoxal (pyridoxine, vitamin B6) kinase", entrez_id: 216134, Experiment: 100011321, C57BL/6J

Study: Mouse Spinal Cord

viral tracer: Mus musculus, Male, P75, coronal

Experiment: 479701339, B6.129, "tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um)", "Emx1-IRES-Cre - Primary visual area, VISp"

Study: Mouse Connectivity anterograde Cre-defined EGFP

viral tracer: Mus musculus, Male, P75, coronal

Experiment: 479700629, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, Laser, Wavelength, (nm), tissuecyte, PMT, (V)", "Emx1-IRES-Cre - Lateral visual area, VISl"

Study: Mouse Connectivity anterograde Cre-defined EGFP

viral tracer: Mus musculus, Male, 11 wks, coronal

Experiment: 479984127, B6.129, "tissuecyte, PMT, (V), tissuecyte, ImageDepth, (um), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Emx1-IRES-Cre - Primary visual area, VISp, RSPd, RSPagl"

Study: Mouse Connectivity anterograde Cre-defined SypEGFP

viral tracer: Mus musculus, Female, P79, coronal

Experiment: 523714940, B6.FVB, "tissuecyte, ImageDepth, (um), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm), tissuecyte, Power, at, Objective, (mW)", "Ntsr1-Cre_GN220 - Anteromedial visual area, VISam, VISa, VISpm"

Study: Mouse Connectivity anterograde Cre-defined SypEGFP

viral tracer: Mus musculus, Female, P77, coronal

Experiment: 479982715, B6.129, "tissuecyte, ImageDepth, (um), tissuecyte, Power, at, Objective, (mW), tissuecyte, PMT, (V), tissuecyte, Laser, Wavelength, (nm)", "Emx1-IRES-Cre - Primary visual area, VISp, VISl, ProS, SUB, CA1"

Study: Mouse Connectivity anterograde Cre-defined SypEGFP

Hspb6 ISH: Mus musculus, Male, P4, variable

Hspb6, Experiment: 100021831, C57BL/6J

Study: Mouse Spinal Cord

	Prenatal (27)
	Juvenile (225)
	Adult (828)
	Aged (10)

	FISH (104)
	ISH (450)
	Microarray (24)
	RNA Sequencing (31)
	XFP (6)
	viral tracer (462)

	Aging Dementia TBI - non-ISH data (10)
	Developing Human Prenatal LMD Microarray (7)
	Developing Human Transcriptome (5)
	Developing Mouse Brain (21)
	Glioblastoma (9)
	Human Brain Microarray (7)
	Human Glioblastoma RNASeq (8)
	Mouse Brain (13)
	Mouse Cell Types - transcriptomics data (8)
	Mouse Connectivity Projection (438)
	Mouse Connectivity Transgenic Characterization (512)
	Mouse Connectivity anterograde Cre-defined EGFP (12)
	Mouse Connectivity anterograde Cre-defined SypEGFP (11)
	Mouse Spinal Cord (10)
	Non-Human Primate Macrodissection Microarray (5)
	Non-Human Primate Microdissection Microarray (5)
	Transgenic Characterization - serial two-photon tomography (1)

	B6.129 (700)
	B6.129.FVB (44)
	B6.C3H (61)
	B6.FVB (114)
	B6.FVB(ICR) (51)
	B6;CFW (2)
	B6;ICR (2)
	C57BL/6J (40)

	Asian (12)
	Black or African American (19)
	European (5)
	Hispanic (12)
	Two or more races (5)
	White or Caucasian (19)

	Dorsal to Ventral (1)
	Lateral to Medial (3)
	Medial to Lateral (1)
	Ventral to Dorsal (2)
	coronal (764)
	sagittal (240)
	variable (11)

	Brain (512)
	frontal lobe (4)
	parietal lobe (3)
	temporal lobe (1)

	Human (46)
	Mouse (1022)
	NHP (10)

	Female (450)
	Male (636)

	control (24)
	glioblastoma (16)

	Passed QC (1041)
	Failed QC (37)